BAC Information

Click to search

BAC

Clone NameMSMg01-067O14
Chromosome13 (Build37)
Map Location 43,224,850 - 43,303,819
singlet/doubletdoublet
Overlap genePhactr1, Tbc1d7, Gfod1
Upstream geneHivep1, Edn1, Hn1-ps4
Downstream geneSirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-067O14.T7 (MSMg01no067_o14.b1)MSMg01-067O14.TJ (MSMg01no067_o14.g1)
ACCAG292532AG292533
length706696
length of high quality
(start - end)
236 (124 - 359)341 (73 - 413)
definitionCHROMAT_FILE: MSMg01no067_o14.b1 PHD_FILE: MSMg01no067_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:09 2005CHROMAT_FILE: MSMg01no067_o14.g1 PHD_FILE: MSMg01no067_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,224,850 - 43,225,085)(43,303,479 - 43,303,819)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAAAGATGCTCATTAGTGACTTCTCGTCCCTGGAAACGTTATGTAAA
GGGCTGAGATTTGGAGGTCCTCGAGAGGCCACGCCACTTATTCAGGAGGC
AATTTGGGTTTCTTGACATCCTTTCTCCCCAAAAACCATCCCAAACACTG
GTAGCCAGCCAAATGCCAAACTAATTAAAGGAAGTGAGAGAAACAAGGTC
CTGGAGGGTGGGGTGGCTGCCTGGGGATGAGCCATCACGCTGAGGGGACA
AGAATAGGAGCTGAGTGCCTCACTCTGGCCAGTTGTGAGGTGTGAGACCT
TGTCAAAAATTTATACAGAAACAACCACCGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGACAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGGAAG
AAAGGAAGGAAGACACAAAAAGAGAGAGAGAAGACAAACAGAAAAGGAAA
GATTATTATTTAGACAGCAATCTAATTCTTTTTTTAAAGATTTATTTATT
AATTACATGAAGTACACTGTATCTGTCTTCAGACATACCAGAAGAGGGAA
TCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGTTTGCTGAGATTT
GAATTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTTTGTAGATCAGACTGGCCTCGAACT
CAGAAATCTGCCTACCTCTGCCTCCTGAGTGCTGGAATTAAAGGCGTGCG
CCACCACACCCAGCTCCACTGGGCATTTATTTAGCAAGACTCAACTGCTA
AGTGTTCACAGCCCTGGCTGTTCCCCTCCTCCATCTTCCTTCCCCTCCAT
TCTAGTCCATGCATACAACCTAATGGCATGAAAAGGCTGCCCCAATCAAC
CTACCTGGAGCTGGCCATTATCTCAGCACTTTGGCTCCCGCAGACACACC
TGCTTATGTCACACATCTCTTTTACCTCCCTTAGGTCAAAAGCAGGAACT
CCTCTCCCTTCTGCGAATAGATGCTTCTCCTTGCTGTGACCAAGTCCATG
ATGGAAGCAATTTCTAGGAGGTCTAGATTCGGTCCATGACGGGAGGGAAG
AATGGGAAGCAGGAAGCATGTAGGTGGGACTGTAAGAGGAGGTGCAATTT
AAATCTCAAGGCCTTCCATGACCCACTTCCAGCTAGGCCCTACTTACCAA
AAGTTCCATAACCTTCCATGAGTCTATGGTGAGGGGGGACCACTTCTGTC
TTTCTTAACGGTTTACTGCTGTGAACATACAATTTTGACCTTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no067_o14.b1 MSMg01no067_o14.b1 CHROMAT_FILE:
MSMg01no067_o14.b1 PHD_FILE: MSMg01no067_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:09 2005
         (236 letters)



>mm_chr13_43224650_43225285
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggccacgccacttattcaggaggcaatttgggtttcttgacatcctttctccccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 agaggccacgccacttattcaggaggcaatttgggtttcttgacatcctctctccccaaa 260

                                                                       
Query: 61  aaccatcccaaacactggtagccagccaaatgccaaactaattaaaggaagtgagagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccatcccaaacactggtagccagccaaatgccaaactaattaaaggaagtgagagaaa 320

                                                                       
Query: 121 caaggtcctggagggtggggtggctgcctggggatgagccatcacgctgaggggacaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaggtcctggagggtggggtggctgcctggggatgagccatcacgctgaggggacaaga 380

                                                                   
Query: 181 ataggagctgagtgcctcactctggccagttgtgaggtgtgagaccttgtcaaaaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ataggagctgagtgcctcactctggccagttgtgaggtgtgagaccttgtcaaaaa 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no067_o14.g1 MSMg01no067_o14.g1 CHROMAT_FILE:
MSMg01no067_o14.g1 PHD_FILE: MSMg01no067_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:09 2005
         (341 letters)



>mm_chr13_43303186_43303926
          Length = 741

 Score =  644 bits (333), Expect = 0.0
 Identities = 339/341 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtagatcagactggcctcgaactcagaaatctgcctacctctgcctcctgagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 actttgtagatcagactggcctcgaactcagaaatctgcctacctctgcctcctgagtgc 575

                                                                       
Query: 61  tggaattaaaggcgtgcgccaccacacccagctccactgggcatttatttagcaagactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tggaattaaaggcgtgcgccaccacacccagctccactgggcatttatttagcaagactc 515

                                                                       
Query: 121 aactgctaagtgttcacagccctggctgttcccctcctccatcttccttcccctccattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aactgctaagtgttcacagccctggctgttcccctcctccatcttccttcccctccattc 455

                                                                       
Query: 181 tagtccatgcatacaacctaatggcatgaaaaggctgccccaatcaacctacctggagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tagtccatgcatacaacctaatggcatgaaaaggctgccccaatcaacctacctggagct 395

                                                                       
Query: 241 ggccattatctcagcactttggctcccgcagacacacctgcttatgtcacacatctcttt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ggccattagctcagcactttggctcccgcagacacacctgcttatgtcacacatctcttt 335

                                                    
Query: 301 tacctcccttaggtcaaaagcaggaactcctctcccttctg 341
           ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 334 tacctcccttaggccaaaagcaggaactcctctcccttctg 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)