Query= MSMg01no068_g13.b1 MSMg01no068_g13.b1 CHROMAT_FILE:
MSMg01no068_g13.b1 PHD_FILE: MSMg01no068_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:50 2005
(317 letters)
>mm_chr13_11823868_11824583
Length = 716
Score = 565 bits (292), Expect = e-165
Identities = 307/312 (98%), Gaps = 1/312 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaagcattcaaaagcacatttctcatgtgcacaaattactcccctcattcagt 64
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggagcattcaaaagcacatttctcatgtgcacaaattactcccctcattcagt 264
Query: 65 gaaaagtgattcattcaatccaaccagcatcacaaaataggtcagattctcctgggtgtt 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 gaaaagtgattcattcaatccaaccagcatcacaaaataggtcagtttctcctgggtgtt 324
Query: 125 gggagatggaaaatagttacagttgtgtagaatcctcttcaggtctactagctgttagac 184
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 gggagatggaaaatagttacagttgt-tagaatcctcttcaggtctactagctgttagac 383
Query: 185 tcatacatattataaaccttaactacaggtgtcttaggggatatataggtaagaatgttt 244
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 384 tcatacatattataaaccttaactacaggtgtcttagggaatatataggtaagaatgttt 443
Query: 245 tctgctcttccaaaggacaccagtttagttccctattcctccaggggatctgacactctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 tctgctcttccaaaggacaccagtttagttccctattcctccaggggatctgacactttc 503
Query: 305 tttttacttgaa 316
||||||||||||
Sbjct: 504 tttttacttgaa 515
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 716
Length adjustment: 9
Effective length of query: 308
Effective length of database: 707
Effective search space: 217756
Effective search space used: 217756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no068_g13.g1 MSMg01no068_g13.g1 CHROMAT_FILE:
MSMg01no068_g13.g1 PHD_FILE: MSMg01no068_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:50 2005
(144 letters)
>mm_chr13_11972693_11973236
Length = 544
Score = 223 bits (115), Expect = 5e-63
Identities = 137/145 (94%), Gaps = 4/145 (2%)
Strand = Plus / Minus
Query: 1 tccctggtgtgatgtgcggttgggatggctccagtgagaacagcttcggcccaggttctg 60
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 350 tccctg--gtgatgtgcggttgggatggctcgagtgagaacagcttcggcccaggttctg 293
Query: 61 cacagacaacaggagttgctaggaagtatctcagatgattctactcatccatataaaatc 120
|||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 292 cacagacaacaggagttgctaggatgcatctcagatgattctactcatccgtataaaatc 233
Query: 121 ta-tcgctgagagctgcagtgtggt 144
| ||||||||||||||||||||||
Sbjct: 232 -agtcgctgagagctgcagtgtggt 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space: 72896
Effective search space used: 72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
