BAC Information

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BAC

Clone NameMSMg01-068H09
Chromosome13 (Build37)
Map Location 24,067,220 - 24,067,433
singlet/doubletsinglet
Overlap geneScgn
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068H09.T7 (MSMg01no068_h09.b1)MSMg01-068H09.TJ (MSMg01no068_h09.g1)
ACCAG292950AG292951
length720715
length of high quality
(start - end)
214 (66 - 279)---
definitionCHROMAT_FILE: MSMg01no068_h09.b1 PHD_FILE: MSMg01no068_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:54 2005CHROMAT_FILE: MSMg01no068_h09.g1 PHD_FILE: MSMg01no068_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:14:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGACTAGGCGGAATTCAGCAG
AGATTCTCATGATAACTGAGATCTCCCAGAGCCACTCATGTGGACCATGC
CTCCACTAGAAAACTCTAATTACAATCCTAAGAGACTTCTGTGGAGGACA
GTACAGAAAGCAGAAATATCTTCTCTGCATTCAAAAATCCAAAAATGCAA
GATGCTGTGTAAATACTGCTCTAAATACAGAGCTGAGCTGTCAAGAACTA
GAGAGAAGTTCTAAGAGACCCCACAAGACAAACAAAATGTCTCCTAGGCA
TGCACGCTGAGTTTTTTATTCTCTAGTATGCTTACTCATAGACCTGCCCT
TCTGTGATACAAGTCTGAGACTACACCTAGCGGACAATGTGTTTGTTACC
TATTTACTATTATAACTCTAAAGAGTAACATCTCTGTTGTAATGATGAAT
TCTTGTCTAAGCGGAGGTGGTGAATACTGATGCTACGAGATACCAACTGG
TAAAGGTATGCTCTTGTATATCTAGTTACTGCTCTATCTTTTACGTACTT
CTCATTATGTACCTTGTTTATTGGTCCTGATGATGTCTGTTCCCAATTCT
CAAACTTTGTTTAACAGATTCAGCTGTATCATTATTATTTCCATTTCCAT
TGCTCCCCTTCTTTTTATTCTTTGCCTCTCTGCTATCTTCTTTTCCTTCG
ACTTCTCATTCATTCTTCTT
CATGATAGTGGAGGCCCGGNGGCGCCTGGCTTTCGGGATTTCGCNGAACN
ANAGAAGGATCTGCGGCCAGCGAGAGCNGCNCNCAACANGGANAGACGAG
GNCAGCGCAGGAGCCACACCGCCCCGGGAGGGAACACAAGANNACACCAG
CAGCAGGAAAAGAAACCCAGGCCCGCCGAACAGGGCCACACACCCCACAA
CGACAGGCACGAGAGGAGGACAAAGACGCAACAGAGCAGAGGGCACGGAG
ATTTCGTGGCTTTCTTACTTTCTGACAGGTATGCTGCCTTGTGTGTAAAA
TGATCCCCTCGCAGTATTTTTTTTTTACCNCACGGGGGAACGACCGACAA
CACGAGCATTTTTTGCCCCCCACCCCGCACGCTGATACCAAAACTATGTC
TCATGTCCGGTACTCCATGAATGATATCAGACTGATCCTACTCATCCACG
GCTGCATTGAGCAGCTCACGTGGACGTTGTCCATTTCTGTACGAAAAACA
CCGTACACTTAGTCCAGCTCGTTTAAATTGTCAGAACGGGAATGAGGCAA
AGTGTATCCCTGGATACCGCCTACCTTAAGGATTAGAATAGAGTACCAAG
CTCGCATAGTCGAGGCGTGCTATCTGGCTCGTTTTCCCGCCTGTAATGTC
TTATTCCTTTTCTTTTCCTCCCTGACTTCGACTTTCTACACCACTTCATC
TCCTGTTCCCGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_h09.b1 MSMg01no068_h09.b1 CHROMAT_FILE:
MSMg01no068_h09.b1 PHD_FILE: MSMg01no068_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:14:54 2005
         (214 letters)



>mm_chr13_24067020_24067633
          Length = 614

 Score =  368 bits (190), Expect = e-106
 Identities = 208/214 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagatctcccagagccactcatgtggaccatgcctccactagaaaactctaattacaa 60
           |||||||||||||||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct: 201 ctgagatctcccagagccacccaagtagaccatgcctccactagaaaactctaattagaa 260

                                                                       
Query: 61  tcctaagagacttctgtggaggacagtacagaaagcagaaatatcttctctgcattcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctaagagacttctgtggaggacagtacagaaagcagaaatatcttctctgcattcaaa 320

                                                                       
Query: 121 aatccaaaaatgcaagatgctgtgtaaatactgctctaaatacagagctgagctgtcaag 180
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 321 aatccaaaaatgcaagatgctgtgtagatactgctttaaatacagagctgagctgtcaag 380

                                             
Query: 181 aactagagagaagttctaagagaccccacaagac 214
           ||||||||||||||||||||||||||||||||||
Sbjct: 381 aactagagagaagttctaagagaccccacaagac 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 214
Length of database: 614
Length adjustment: 9
Effective length of query: 205
Effective length of database: 605
Effective search space:   124025
Effective search space used:   124025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)