BAC Information

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BAC

Clone NameMSMg01-068M10
Chromosome13 (Build37)
Map Location 67,051,105 - 67,171,026
singlet/doubletdoublet
Overlap genePtdss1, Zfp712, Zfp708
Upstream geneEG665897, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1
Downstream geneZfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068M10.T7 (MSMg01no068_m10.b1)MSMg01-068M10.TJ (MSMg01no068_m10.g1)
ACCAG293191AG293192
length674716
length of high quality
(start - end)
252 (47 - 298)287 (56 - 342)
definitionCHROMAT_FILE: MSMg01no068_m10.b1 PHD_FILE: MSMg01no068_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005CHROMAT_FILE: MSMg01no068_m10.g1 PHD_FILE: MSMg01no068_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,170,775 - 67,171,026)(67,051,105 - 67,051,388)
sequence
CTCACTATTTTCAGAGGATCCGCGGAATTCATATAATTTATCAACCTTAG
AAATGAAAGAAATAAGGAAAAACCTTTAATAATAGTTCAACCCATATTCA
CCATCCACCATTACATACTGGAGAGATCTTGTAATAGTGAAGAAGATGGC
CGTGTTGAGCGTTCAATACTTATGGAGCATCAAATTTTTTATAGAAACAC
TACAAATGCAGGTAATACAGGAACTGCTCATTAACCATGAGTGATTTATA
ACCATATGTTATACATGCAAAATGACTTTGGAAGGAACACTGACAAATAC
TTAACACTGAGAAAACCAAACTGGTTCAGTAAAAAGCACTTTGTAAACAG
TGTTGCAACACTTTGCTCATCATGTATATCTTGAGAGATTGGAGAGAATT
ATCTATCATAAGAGACTACTTCCAGGAGCTGTATAGGATTTAGCATGCCA
CCAAGTGCTGCTCTGAATTCCTAAAGAATTAATACTGAACTCTGAACTCA
CTACCAAATGTTTGGTGTGCTACTACAACTCATTATAGACTTTGGACACA
TGCATATAATTCTGTGAGGACCTCAATGTGTCATATATTGACCTTATTAC
CTCACTTTTTAAATGTGTTAATATCACTCAACTATTGATTTTTATCCGTT
TTGTTTTCCCCCCCCTATTATCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAAATATGACAGCAGTGTGGTGGAGTTGGTCTACTCTTATGGACAG
GGCTCGAGATTATTTAGGAGAGTCTGCATAACATGAGCACTAGAAAACTC
TATTCGGAATAGGTTGAAGGATGAGGAAATATTTTACACTCTTATATAAC
ATAGAGTTCAGGAGTAGCATGGCTCTGGAGCTACAAAAATACAACAGGTG
GCTGTGAAACCCACATTCTTTATCCCTTTCTCTTCTGTTGTCATGAACAG
TTCGTCCTGGACGGCTCTACCCAGATGGGCTTAACCTGGTACCCAGGTTC
AGCATTGCCCATCAGTAGATGAGCTTAGATTATTTTCTGTGTTATTAGGA
GTAAAATAACCTGTTTCTGATTTTTAAAAACCTGTGCGTGTGTGTGTGTG
AGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCTGATGTTCTTTCGCACC
TGTGTTAATCATCTATTATTTTTATTTCTGTGCAACCTCTCATCATACTT
AGCGTTACTCACTTATTTCCCCACCCTCCATCCATTTTTTTTTCTTTCTC
TCCCCCCCTTTTTTATTTTCCCCCTATCTCTTTCTCTCTAACCTCCTTTT
TCTTGCCCCCCCCTCTCCTTATTTCTGCGCCCCCCTCCCTCCTCCTTTTT
CTTTTTACTTTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_m10.b1 MSMg01no068_m10.b1 CHROMAT_FILE:
MSMg01no068_m10.b1 PHD_FILE: MSMg01no068_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
         (252 letters)



>mm_chr13_67170575_67171226
          Length = 652

 Score =  464 bits (240), Expect = e-135
 Identities = 249/252 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttagaaatgaaagaaataaggaaaaacctttaataatagttcaacccatattcaccatcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 452 ttagaaatgaaagaaataaggaaaaacctttaataatagttcaacccatattcaacatcc 393

                                                                       
Query: 61  accattacatactggagagatcttgtaatagtgaagaagatggccgtgttgagcgttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 accattacatactggagagatcttgtaatagtgaagaagatggccgtgttgagcgttcaa 333

                                                                       
Query: 121 tacttatggagcatcaaattttttatagaaacactacaaatgcaggtaatacaggaactg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 332 tacttatggagcatcaaattttttagagaaacactacaaatgcaggtaatacaggaactg 273

                                                                       
Query: 181 ctcattaaccatgagtgatttataaccatatgttatacatgcaaaatgactttggaagga 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 272 ctcattaaccatgagtgatttataaccagatgttatacatgcaaaatgactttggaagga 213

                       
Query: 241 acactgacaaat 252
           ||||||||||||
Sbjct: 212 acactgacaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space:   156249
Effective search space used:   156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no068_m10.g1 MSMg01no068_m10.g1 CHROMAT_FILE:
MSMg01no068_m10.g1 PHD_FILE: MSMg01no068_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:19 2005
         (287 letters)



>mm_chr13_67050905_67051591
          Length = 687

 Score =  549 bits (284), Expect = e-161
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatatgacagcagtgtggtggagttggtctactcttatggacagggctcgagattattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatatgacagcagtgtggtggagttggtctactcttatggacagggctcgagattattt 260

                                                                       
Query: 61  aggagagtctgcataacatgagcactagaaaactctattcggaataggttgaaggatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggagagtctgcataacatgagcactagaaaactctattcggaataggttgaaggatgag 320

                                                                       
Query: 121 gaaatattttacactcttatataacatagagttcaggagtagcatggctctggagctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaatattttacactcttatataacatagagttcaggagtagcatggctctggagctaca 380

                                                                       
Query: 181 aaaatacaacaggtggctgtgaaacccacattctttatccctttctcttctgttgtcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatacaacaggtggctgtgaaacccacattctttatccctttctcttctgttgtcatg 440

                                                       
Query: 241 aacagttcgtcctggacggctctacccagatgggcttaacctgg 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagttcgtcctggacggctctacccagatgggcttaacctgg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)