BAC Information

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BAC

Clone NameMSMg01-068O02
Chromosome13 (Build37)
Map Location 12,763,711 - 12,764,143
singlet/doubletsinglet
Overlap genenone
Upstream geneRyr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862
Downstream geneEG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-068O02.T7 (MSMg01no068_o02.b1)MSMg01-068O02.TJ (MSMg01no068_o02.g1)
ACCAG293271AG293272
length718715
length of high quality
(start - end)
417 (60 - 476)347 (77 - 423)
definitionCHROMAT_FILE: MSMg01no068_o02.b1 PHD_FILE: MSMg01no068_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:28 2005CHROMAT_FILE: MSMg01no068_o02.g1 PHD_FILE: MSMg01no068_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:15:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGGA
ACTTTCCAGAGGGGGCTAGTTAGTCTGCCTTACACAAACCATTAGAGATC
TTGTGTCAATAAACGTGGGAGGTGAGGACTACACCTGAGATTGTCCTCTG
ACCTCCATACCTTGGTATAAGTATAATACCTGCACATACACACATATACA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAGAAAGAGA
GAAACAGAGACAGATAGACAGAGACAGAGAGAGATAGACAGACAGAGAGA
CCGAGACAGAGAATTTCAATTATATATGCGATTCATCCTATATCTCCATG
GATAGGTCCATTCTATACTCTCAGAATCTAGAAACTTGCAGACATTCTCT
TTCTGCAACCCTCCCTTCCTCTCTCTGGGTTCCTCTCTCTGTTACTGTGT
ATACGTTACAAGACTGATACTCTTCAAGGAAACCACATATAAGGAACCAA
TCTGGCTTTACATAGGTCCCAAACAGAGTGACTTTGTATCCTATAAATAA
CTCCATCTTATCCAGAACACCTAATCTTTAGTGTATTGGCATATAATTCC
CAATTCCCAGCCACTCTAATATATTGAAAACTAAGGGCAATCATGTGAGT
TTCAAAGCCCAGTGTTTTACCCCTTCTACCGCTTATTTATATAGTCTCCT
ATTCCCCTAACCTGGGGG
CCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACACAAAAGAAAATAAAAGGATC
AGGTTCTAACAAAGCATGCAAATACCTTAATACTTGTTCCACTTCTTTCA
TAGAGCAAGCAAATTTGGGTGCAGCAAGGGAGATAGGAGACACTTTCTTT
CATACCTCTTCTTAATAAAATAAAGTAGTTAGTATTCCTTATCAACGTGA
AGTAATACAAAATGGGACCAGTCTTCCTAGTCTTGCCACAGAAATTGGCA
GCACATTACCCAGTGCACTGAATGTTCAGGCATGAAATTTACAGGATATA
TTAAACTTGCCTCAAAGTTGAGAATGAGCAATGTATTGCAGAGTCAGAAT
CTCTGAAAGGAGACTTTCTAAGACAAAGTGTGAACTTGTAGAGGTAAAGC
CAAAATGGCAATGCCTCTGCTAGTTGGTGGGAAATACTCTATTTTGAGGG
GAAATTCTTCTAGAGTTCTCTTTTTTTATTGTATCCTGGTCTATTTTTAT
TATCAGAGTAATATCAATTCAGATAAATTAGTCTGTTAGTATCCCCTTTC
CAGAAAATTTTACACAGCCTAATTATATGTTGAGGAAGTCCAAAAAATTT
GTAAATTTTTAATTACTAGGGGACAAGGAAAACTTCACCACGCCCAATAA
TATTTTAATCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no068_o02.b1 MSMg01no068_o02.b1 CHROMAT_FILE:
MSMg01no068_o02.b1 PHD_FILE: MSMg01no068_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:15:28 2005
         (417 letters)



>mm_chr13_12763527_12764343
          Length = 817

 Score =  752 bits (389), Expect = 0.0
 Identities = 415/433 (95%), Gaps = 16/433 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggggctagttagtctgccttacacaaaccattagagatcttgtgtcaataaacgtggg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 185 agggggctagttagtctgccttacacaaaccattagagatcttgtgtcaataaaggtggg 244

                                                                       
Query: 61  aggtgaggactacacctgagattgtcctctgacctccataccttggtataagtataatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aggtgaggactacacctgagattgtcctctgacctccataccttggtataagtataatac 304

                                                                       
Query: 121 ctgcacatacacac----------atatacagagagagagaga------gagagagagag 164
           ||||||||||||||          ||||| |||||||||||||      |||||||||||
Sbjct: 305 ctgcacatacacacatatatatatatatagagagagagagagagagagggagagagagag 364

                                                                       
Query: 165 agagagagaaagagaaagagaaagagagaaacagagacagatagacagagacagagagag 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agagagagaaagagaaagagaaagagagaaacagagacagatagacagagacagagagag 424

                                                                       
Query: 225 atagacagacagagagaccgagacagagaatttcaattatatatgcgattcatcctatat 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atagacagacagagagaccgagacagagaatttcaattatatatgcgattcatcctatat 484

                                                                       
Query: 285 ctccatggataggtccattctatactctcagaatctagaaacttgcagacattctctttc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ctccatggataggtccattctatactctcagaatctagaaacttgcagacattctctttc 544

                                                                       
Query: 345 tgcaaccctcccttcctctctctgggttcctctctctgttactgtgtatacgttacaaga 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tgcaaccctcccttcctctctctgggttcctctctctgttactgtgtatacgttacaaga 604

                        
Query: 405 ctgatactcttca 417
           |||||||||||||
Sbjct: 605 ctgatactcttca 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)