BAC Information

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BAC

Clone NameMSMg01-069H18
Chromosome13 (Build37)
Map Location 94,807,673 - 94,807,882
singlet/doubletsinglet
Overlap genenone
Upstream geneEG218444, Papd4, LOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb
Downstream geneCycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca, Otp, Wdr41, Pde8b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069H18.T7 (MSMg01no069_h18.b1)MSMg01-069H18.TJ (MSMg01no069_h18.g1)
ACCAG293731AG293732
length801782
length of high quality
(start - end)
253 (130 - 382)209 (127 - 335)
definitionCHROMAT_FILE: MSMg01no069_h18.b1 PHD_FILE: MSMg01no069_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:15 2005CHROMAT_FILE: MSMg01no069_h18.g1 PHD_FILE: MSMg01no069_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCCTTCCCCCCCTTTTTTTCTCCCTCCCTTCCTTTCCCCTCCTCCATT
TTCTCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAATGAGA
GCGCGGAATTCAGAGATTTGCAATGAATGTGTAGTAGCTCACAAGTTCAA
GCCAGACAAAATCCCAACACAGGAAAGGAGAAGTGGGCACAAACGCCTGG
TCAAGAAGCGATCTGTAATCGATACCTCCTGGGAGAGGGAAAATCAGTTT
TCTCCAATGGGTTAACACTGTGTATACCAACTCCACTCTAAGGCAGGTTG
TCTCACACTCTGGAGTAGTCGGCTAATTCAAAAGACTCCATGGCTTTTGT
TGCTGTTGTTGTTATTGTTTTGTGTTTTCTATGTTGTTTTGTTTTCTTGT
TTCTTTTTACTTTTTGATAGAGAAAGACCTGACGCTGGTTGAGTAAGGAG
TGTGCGGAGGATTTGTTCACCCCCCCTTTTTTTCTCTTCTCCCCCCCCCT
TTTCCTACCTCCTTTTATCCCTCTTCCCCTCCGCTTTTCATTTTTCCCTT
CCCCCCCTATCACCCACTATTATATCACTTCCCCAATTCGCTCATAATCC
CAACCCCTATTCCTCTTTTCAATTCATCCCCCTTTTTTTTTTCTTTTTAT
CTTCCTTTTTCCCCCTTCCCCCCCCTCATCCTATTTCACTTTCCCCTCCC
CTTTTTTCCTCTCTTTTTCCCCCTTTCCCTCTCTTTTTTTTTTTTTCCCC
TTATTCCCTCCTTCCCCTTTTTTTTTTTTTTCCCCTTTCACCCCACCAAC
T
TTTTTTTTTTCTTTCTTTTTTTTCCTTTTTTCCCTCTTTTCAACAATANN
NNNTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAGCATTCACAAGCACTATTGC
ATGGCTTTATTTTGCTCTATAGGGAAGTGAAGGGAATTAACATATTCCCT
CTAAGTCACTTCATGAGCCTGTATTCCTTGAAAACTACAACAGAGTTTAC
TGACTGTCTCTTCCTTCATAGTGTTAGTCGGATGCTGCCATTGTTACCAA
AAGCACAGACAAGCTTCCTCGTTGGCAGTTCTGGGAGCCTGGGAGCTTTG
GAGAGCGTTCTGGACTGAGATAAAGAAGCTACACTTCTGGATCACTGCCA
CAGTCAAACTTTTAACATCCCCACGACCCCAAAACTTGATTGATCACATT
GTTTTCCGTGTTTGCAGCATTCCCCCTGAACTCCTCTTGTGTTATCAGCA
AACACCCAGCTGTTTTTTCTCTGCGAGGTCTCTGGGGCAGAAAGGCCCTT
TTCACAACTGCATATTTTTGAATAGTGCATCATATCGCTCTTTCATCCCA
CTATTGAAGTGCCTGACTTTCTATTAGGCCAAATTATTGTTCATGTCTTC
TTCAGCGGGTTCTGCAACTTTTGTAACCCTGCTCTCACAAAGTTTGAATT
AGCTTTCCCGAGATGTATTTTATTTTTTATGATCATGTTTAATGGAATAT
CTTCTTTTACTTATTTTTACCCCCACCCTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_h18.g1 MSMg01no069_h18.g1 CHROMAT_FILE:
MSMg01no069_h18.g1 PHD_FILE: MSMg01no069_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:15 2005
         (209 letters)



>mm_chr13_94807473_94808082
          Length = 610

 Score =  352 bits (182), Expect = e-102
 Identities = 203/210 (96%), Gaps = 1/210 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagcattcacaagcactattgcatggctttattttgctctatagggaagtgaagggaa 60
           |||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||
Sbjct: 201 attagcattcacaagcactattacatggctttattttgttcaatagggaagtgaagggaa 260

                                                                       
Query: 61  ttaacatattccctctaagtcacttcatgagcctgtattccttgaaaactacaacagagt 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttaacatattccctctaagtcacttcatgagcctgtattcctcgaaaactacaacagagt 320

                                                                       
Query: 121 ttactgactgtctcttccttcatagtgttagtcggatgctgccattgttaccaaaa-gca 179
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 321 ttactgactgtctcttccttcatagtgttagccggatgctgccattgttaccaaaaagca 380

                                         
Query: 180 cagacaagcttcctcgttggcagttctggg 209
           ||||||||||||||| ||||||||||||||
Sbjct: 381 cagacaagcttcctccttggcagttctggg 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 610
Length adjustment: 9
Effective length of query: 200
Effective length of database: 601
Effective search space:   120200
Effective search space used:   120200
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)