BAC Information

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BAC

Clone NameMSMg01-069M23
Chromosome13 (Build37)
Map Location 69,636,111 - 69,636,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2, LOC666205, LOC218332
Downstream genePols, A530095I07Rik, Srd5a1, Nsun2, LOC100042260, 3110006E14Rik, 4930547H16Rik, Med10, EG620143, LOC100042291, 4930520P13Rik, EG633042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-069M23.T7 (MSMg01no069_m23.b1)MSMg01-069M23.TJ (MSMg01no069_m23.g1)
ACCAG293980AG293981
length683689
length of high quality
(start - end)
286 (59 - 344)228 (131 - 358)
definitionCHROMAT_FILE: MSMg01no069_m23.b1 PHD_FILE: MSMg01no069_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:40 2005CHROMAT_FILE: MSMg01no069_m23.g1 PHD_FILE: MSMg01no069_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATACACTCCTATAGGTACAAATACGCGGAATTCCAGCAAGGTTTGCA
AAAACATAGTAGGCTGTTTTTCTTGGAAGCAAGTGTGTAGAGGCTTGTAT
TTGTTCCGACCTCAGGAGTGTGAGGCTGACCATGCAGTGCAGACTGTTGG
CTGTCTTGGAGAAAGAGCATTGTTTTTATTCTTGACAGTTTACCTACAAG
TTGTCAAGCCCCGGGTGTGTGTTCAAGCAGCGTGTGCAGAAGTGAACCCG
TACCTCATAATTCAGTTGGCTCAAGTAGGGAGAGGCCTTATGGATAAGCT
AGAACTCTGAGCTGCTGCTCAGTCATAAAGCTGAGAAGCAGACCTGTTGT
TGTGCTGACACTGCCTCTCAGGATTCAGGGCAGATGGAAACGGAGCCACA
GGCCTGAGTCTGTGAACACTTCTGGCTTGGGCCTGTCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTACTTACTTCCTTCCTTATTTC
CTTCCTTCCTTCTTCCTTCCGTTCCTATCCCCATCATTTCCCACCTTTCT
TTCTATTTTTTTCCTTGTGCTTCTGTTCACTGTTATTTGCATCTTTGCGT
CCTTATTCCTTATCCCTTCTTGCCTTCTTCCCATTTTCTGTATCTCTTTT
TGTTACCTCCACGTTATTTCCATTCCTCTTCTT
AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCCAAAAACTGGGAAGTTTTCAGAGTATTTGGTAGAGC
CCCAACATGTGCTTGTTTGGGCCGTTGTTGTTGGTCACAGTTTGTTAAGT
AGTTGTGTGCAAAGAAGAAACAACAACAAGAAGAAATTAAGATGTCCTGA
CAGAGAAGATCAAACTTACCCCCAAGGAACTCAACAGCCCTAATCAGTAG
GAAGTATCTAACAATAACACTGCCCCCTTTCGAACAAATTACCCATAGGA
GGAGATACTGAGACAAAGTGTGTTATAAAGGCCATCCAGAGACTGCCCCA
CCTGGGGATCTTTCCTANTTACCCCCACCCCCCCCAGACACTATTGTGGA
TGCCAATAAGTGCTTGCTGACAGGAGAAAAAAATAACTACCTCCTAGGAG
GCTCTGCCAGAGCCTGAATAATACAGAGGTGGATGCTCTCAGTCAACCAT
TGGACTGATCATGGGGCCCCCAACGTATGAGCTAGATAAAGGACTTTTCG
ATTTGAATAGGTTTGCAGTCTCATAGGATGAACACCATATGAATCATTCA
GCTTTCTCAGAAGTCTCACGTACTACTTCTTCACTCAGAGACTACCTTTT
GCGTTACTCTCGTGTCCCCCTGCCTACGTTTCCCAGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no069_m23.b1 MSMg01no069_m23.b1 CHROMAT_FILE:
MSMg01no069_m23.b1 PHD_FILE: MSMg01no069_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:40 2005
         (286 letters)



>mm_chr13_69635911_69636596
          Length = 686

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaggctgtttttcttggaagcaagtgtgtagaggcttgtatttgttccgacctcaggag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 486 gtaggctgtttttcttggaagcaagtgtgtagaggcttgtatttgttctgacctcaggag 427

                                                                       
Query: 61  tgtgaggctgaccatgcagtgcagactgttggctgtcttggagaaagagcattgttttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtgaggctgaccatgcagtgcagactgttggctgtcttggagaaagagcattgttttta 367

                                                                       
Query: 121 ttcttgacagtttacctacaagttgtcaagccccgggtgtgtgttcaagcagcgtgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ttcttgacagtttacctacaagttgtcaagccccgggtgtgtgttcaagcagcgtgtgca 307

                                                                       
Query: 181 gaagtgaacccgtacctcataattcagttggctcaagtagggagaggccttatggataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gaagtgaacccgtacctcataattcagttggctcaagtagggagaggccttatggataag 247

                                                         
Query: 241 ctagaactctgagctgctgctcagtcataaagctgagaagcagacc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ctagaactctgagctgctgctcagtcataaagctgagaagcagacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)