BAC Information

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BAC

Clone NameMSMg01-070A09
Chromosome13 (Build37)
Map Location 90,796,945 - 90,797,406
singlet/doubletsinglet
Overlap genenone
Upstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070A09.T7 (MSMg01no070_a09.b1)MSMg01-070A09.TJ (MSMg01no070_a09.g1)
ACCAG294143AG294144
length668677
length of high quality
(start - end)
465 (31 - 495)388 (70 - 457)
definitionCHROMAT_FILE: MSMg01no070_a09.b1 PHD_FILE: MSMg01no070_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:56 2005CHROMAT_FILE: MSMg01no070_a09.g1 PHD_FILE: MSMg01no070_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:16:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTAATACACTCCTATATCCAGAGATGCGCGGAATTCACATCCTAAAC
CAAACCATCACAAATAAAGTCAGTCAACATCCATCATATATGAGGGAGGA
AGACATGAGCTCCCAGGCCTATTAACAGTTGATGGCTGCTAGGAAAGAAA
AAGCTTTGGTTTGTTTGGTTTTAGGAATGTGGTCCATGGTAGGTTAACTA
TGCTCCAGTTGATGGGCCAGAAGCCATGCATTTATGAGCAGCACTAACTG
AACTCAGTGCATTATGTAAAATAAAAATGAAAAAGGAGGCATGAAAATGG
GAGACTTGAGAAGAGTTGAAGTGGCATGTAACATATTATATGCATGTATG
AGATTCTCAAAGAATAAATTAAAAATATTATGTTCAAAAAAGAATGCTTG
AAGACTTTGTGCTAGTATGCAAAGGTTCTACTTCTTTCTCCCTCGTAAAG
TTTAGAGACCAGTGGTGTAAAATTACATAGAATGGAAAAATCAGAGTTCA
AGGAAGAATGGCCTGCAGTCACTCCACAAAATCTGAGATCGGGATCCTGC
AGAGTAGTTAGCATTCTAGAGACTTAGGAGAGACCAAATGAGTCCAAAAA
GGGATATTTTAATCCATCAGTACATAATATGAGGTTAAAACACTTTATAG
AGTAATACTCCCAAAAAG
CCATGAAGTGGTAGCCTGGCGGCCGCTGCTCCCAAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTACTGCTGTGAAACGACATCAAGACAAAAA
GCAATTTGGGGAGCAAAGGGTTTCTTTTGTTTATACTTTCACATCACAGT
CCATGACTGAAGGAAATTAGGGTGTTGCATGTAGGTTTTGCTGCTCCACC
TAATCTCTGGGAATGGACCTCACTACCAGTCTCCACCCACAGAATATTGA
ATCCACATATGAAAAATACAGACTCATACGTTGCTCAATTTCAACTTGCC
TTGTGGACTCATTGCTGGGCATTATTAATCTCCCATGGCTAGTGTGCCCT
CCCCAGTACTCTTAGCTTAGCACCCTAAATCTGTCCTCAACTTTAGTTGC
TCAGTTACCTTTGGTCCTAGCTCAACATCCTCAAACCCCTGCCTGTATAA
GTGGCCTGTGGTCACTCTGCCCAAGACCTCACATGACTGTTTGGCTTTTC
TCCCTGTTAAACATGATGAAAACCATTTATCTTCCCCTCCTGGTGTCTGT
TCACTTGCCTGTGGGGACCTGAAAGTCCTGTCTATTTCCTCTGCCCTGTA
AATGGCTCCAGGCATCTCTACTGATATATTATGAACCCACTGGGAAACAG
GATCTTATCATCCTAACCACCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_a09.b1 MSMg01no070_a09.b1 CHROMAT_FILE:
MSMg01no070_a09.b1 PHD_FILE: MSMg01no070_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:16:56 2005
         (465 letters)



>mm_chr13_90796742_90797606
          Length = 865

 Score =  857 bits (443), Expect = 0.0
 Identities = 458/463 (98%), Gaps = 2/463 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcacatcctaaaccaa-accatcacaaataaagtcagtcaacatccatcatatatg 62
           |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacatcctaaa-caagaccatcacaaataaagtcagtcaacatccatcatatatg 262

                                                                       
Query: 63  agggaggaagacatgagctcccaggcctattaacagttgatggctgctaggaaagaaaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agggaggaagacatgagctcccaggcctattaacagttgatggctgctaggaaagaaaaa 322

                                                                       
Query: 123 gctttggtttgtttggttttaggaatgtggtccatggtaggttaactatgctccagttga 182
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 323 gctttggtttgtttggttttaggaatgtggtccatggtgggttaactatgctccagttga 382

                                                                       
Query: 183 tgggccagaagccatgcatttatgagcagcactaactgaactcagtgcattatgtaaaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 383 tgggccagaagccatgcatttatgagcagcactaactgaactcagtgcaatatgtaaaat 442

                                                                       
Query: 243 aaaaatgaaaaaggaggcatgaaaatgggagacttgagaagagttgaagtggcatgtaac 302
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 443 aaaaatgaaaaaggaggcatgaaaatgggagacatgagaagagttgaagtggcatgtaac 502

                                                                       
Query: 303 atattatatgcatgtatgagattctcaaagaataaattaaaaatattatgttcaaaaaag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atattatatgcatgtatgagattctcaaagaataaattaaaaatattatgttcaaaaaag 562

                                                                       
Query: 363 aatgcttgaagactttgtgctagtatgcaaaggttctacttctttctccctcgtaaagtt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatgcttgaagactttgtgctagtatgcaaaggttctacttctttctccctcgtaaagtt 622

                                                      
Query: 423 tagagaccagtggtgtaaaattacatagaatggaaaaatcaga 465
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tagagaccagtggtgtaaaattacatagaatggaaaaatcaga 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)