BAC Information

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BAC

Clone NameMSMg01-070I11
Chromosome13 (Build37)
Map Location 112,313,458 - 112,464,121
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040614, LOC668159, 4732495G21Rik, LOC100040640, EG621953, Gpbp1
Downstream geneLOC100040666, Mier3, Map3k1, LOC668181, LOC100040716, LOC100041161, LOC100041175, Ankrd55, LOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070I11.T7 (MSMg01no070_i11.b1)MSMg01-070I11.TJ (MSMg01no070_i11.g1)
ACCAG294528AG294529
length679678
length of high quality
(start - end)
269 (33 - 301)240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no070_i11.b1 PHD_FILE: MSMg01no070_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:38 2005CHROMAT_FILE: MSMg01no070_i11.g1 PHD_FILE: MSMg01no070_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,313,458 - 112,313,691)(112,463,882 - 112,464,121)
sequence
GCGGCGCTATACACTCCTATTTCGAGAGGACCGCGGAATTCAACAGGTAG
CGAAAGATACATCTCTAACTGTATTATGAAAGTCAAAGTCTGATTCTAGC
CGGGGAAGGGAGACAACCATTAAGTATCAGCAATGATATTCAGATGATGA
AAGAGAAACGTTTCCCATGGGCTCACATCTTCAAAGCAGTTGATGATGCT
GTTTGGAGCAAGCCATGGAACCTTTCTGATATGGAGCCTTGCTGGAGGAA
ACATGTAACCATGTAACCATGTAACCATGTAACCAGGGGTGGGGAGTGAA
GGTTGTTTTCTGTGTTTGAGTGTCTATCTCTTAGTCCAACTTCCGCCTCT
TCTCTCTGCTTCTTCATTTATACTCGTTTCCGCTCTCTGACTCCCTTTGC
TACCCCCCTCTGTACTTTTCCTTTGTTTTTGGCCCCTACTTACTTTCATT
TTTTTTTTTTTCTTCTGTTTCCGGCTCATTCATTTTTATCACATCATTAG
TAATGTTATTACTTACACCTATTACTTTTGTTTTTTTCCTCTCTTGTTTC
TCCTTACTACCCTCCCTTCTTTATCATTTCCCCTCCCCCTCTTTTTGTTT
TTTATTTACCTACCCCCCGTTCCTTACAAATCTTTAATTTTTTTTTTTTC
GCCTTTTCTTGCACTCTTCTTGCCTCCCT
CCGATGTAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGACCTCCAACT
CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCA
ACACTACCAGCCAGACATAGTTAACTTTTAAGCTATGTTTAATACATGTT
CAATCTTCCTGGCTTGTGCATATATATTTTAAAGTTGGGCCTGACTGGGG
ATTGAAGAGCTTTAGTTCTCATTGGGATTTTCTGGTATCAAACACAAGAC
ACTGTGTAGTGAATGTTAGTGGATGGGACGGTTCTATTAGCAATAGATTA
TTAATAAATAGTAATGGCAACTAGCCATCTGTGGAAGACATTGTTTCTGA
GAGTGATTTGAACTGTGTAGACCTGGCCCAAGAAGTTTCAGTGGAGAGGA
ATTTTTTAGTATGTGACCTAGAGATGTTTTATGGTATTTCGGTGAAGAAC
GTGGCTGTTTTTGCCCTTGTCTGAAGGATCCACCTGAGGCTGAGGTAAAG
AGATTTGTATTAGCTGCACTGACAAAGGGAGTCTCAAAAAAACCCAGCAG
AGACTTTGTTCTCTCAGTCTCCTGAAAAGCGTTCTGATCAAGCCATATCA
TACTTTAAAAAGAAAAAAGACAATTTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_i11.b1 MSMg01no070_i11.b1 CHROMAT_FILE:
MSMg01no070_i11.b1 PHD_FILE: MSMg01no070_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:38 2005
         (269 letters)



>mm_chr13_112313255_112313923
          Length = 669

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcaacaggtagcgaaagatacatctctaactgtattatgaaagtcaaagtctgatt 63
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaacagggagtgaaagatacatctctaactgtattatgaaagtcaaagtctgatt 263

                                                                       
Query: 64  ctagccggggaagggagacaaccattaagtatcagcaatgatattcagatgatgaaagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagccggggaagggagacaaccattaagtatcagcaatgatattcagatgatgaaagag 323

                                                                       
Query: 124 aaacgtttcccatgggctcacatcttcaaagcagttgatgatgctgtttggagcaagcca 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 aaacgtttcccatgggctcacatcttcaaagcagttgataatgctgtttggagcaagcca 383

                                                                 
Query: 184 tggaacctttctgatatggagccttgctggaggaaacatgtaaccatgtaacca 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggaacctttctgatatggagccttgctggaggaaacatgtaaccatgtaacca 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no070_i11.g1 MSMg01no070_i11.g1 CHROMAT_FILE:
MSMg01no070_i11.g1 PHD_FILE: MSMg01no070_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:38 2005
         (240 letters)



>mm_chr13_112463597_112464236
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctgacctccaactcagaaatctgcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 actctgtagaccaggctgacctccaactcagaaatctgcctgcctctgcctcccaagtgc 466

                                                                       
Query: 61  tgggattaaaggcgtgcaacactaccagccagacatagttaacttttaagctatgtttaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tgggattaaaggtgtgcaacactaccagccagacatagttaacttttaagctatgtttaa 406

                                                                       
Query: 121 tacatgttcaatcttcctggcttgtgcatatatattttaaagttgggcctgactggggat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tacatgttcaatcttcctggcttgtgcatatatattttaaagttgggcctgactggggat 346

                                                                       
Query: 181 tgaagagctttagttctcattgggattttctggtatcaaacacaagacactgtgtagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgaagagctttagttctcattgggattttctggtatcaaacacaagacactgtgtagtga 286


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)