BAC Information

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BAC

Clone NameMSMg01-070L21
Chromosome13 (Build37)
Map Location 7,794,171 - 7,794,597
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667611, EG623516
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070L21.T7 (MSMg01no070_l21.b1)MSMg01-070L21.TJ (MSMg01no070_l21.g1)
ACCAG294691AG294692
length748691
length of high quality
(start - end)
419 (118 - 536)434 (74 - 507)
definitionCHROMAT_FILE: MSMg01no070_l21.b1 PHD_FILE: MSMg01no070_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:55 2005CHROMAT_FILE: MSMg01no070_l21.g1 PHD_FILE: MSMg01no070_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:17:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTNNNNCCCCNNNAAGGNCNTNNCCCCNTCCCCTCCCCTCTTCTACC
TATTATAATTGCGGCGCTAAACGACTCATAATTCCGAGAACCGCGGAATC
CAGGACAGCCACCGAACACAGAGAAACCCTGTTTGAAAAAAATACCCTCT
CTCCCCCAAAAAGAAAAGAAAACATCATACGCTTTGGTCAAATGGCCCAG
GGGACCATAACTGGCTCTGACTTGAAAGACTGCTACCTGTGTACTAGCTT
TCATGGTACTCCTAAACCTCATTCGAGCTTCCAAAGGTAGGAAGCAATCA
GCAGTCTGACCTATGTAAAACCTATGAACCATCATCATGCCACAATAACC
TTAAGGTGCTAATAGTGACACACATAGTTTGACAATCAACAGCAGCTCTC
AAATTAGACTTAAAGGCATGAGCAACAAGCAAGGAACCATGTTGGATGCT
AGAAACCTAGCCAATTACCTGGGCCTGTGACCTCATGGATCTCCGAGGAG
AACCTATAACCACCACTTTATTTTATTATTTTTTTTTTTAGAAAAAAGTT
ATCATTTTTAATAGCATTCTATTTTCTACTCATGAACATGATATATTTCT
CCTTTCATTATAGGCCATTGTGCATCTTTCTCATCATTTATTTGAAATAT
CCATAAATATCTTCCCTAAATAATTTAATTTTTTTATCTGGAAACAATTT
ACCTACTTGATGCATTTACAGATTAACTTTTTTTCCCACTCCTCCCCT
ACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCATTCTGACTGATCATCTGCCCTCT
TCGACCAGCTGCTGACTGTGTTGCCTTTATTTCTTCTCGTATTAAGAAGT
GCTACAAACAGCAAAGAATGTCTAACTTTTGACAAGCCCATTTGTACAAA
ACAAGTGAACACCAGGATGTGTCACAGCTCTTAATCTCTGTTTCTTAATT
TCCTTTTATTCATGTCTCATCATTCCTCTGCCAGGTTTGTATGAAGAATG
AATTATTGACTTTATTACATAAAATAATAACTTATTTTTAGATGAGAATG
TTTTGAGGAAATTGAATAGTTCCTTCCATTAATAAAGACACTGGCATGTG
GAAACACATATTCATTCAACTAAGATCATTCATTGTCAGTCAAAAAGCTT
GAGATTACAACACCTTTTCTTTCTGCTAACATTCCTTGTAGCTATTTCTT
CAGAAAGAATATTGTGAATTAAATCTTTTGTTCCAGAATTTTGCTAACTT
TCCTGTTTTTATACCCTTTAAATTTAATTTTAAAATTCCCAAATTTGGGG
TAAATCATCTTTATTTCTGTGGTACTGACTGTCTCCATGAAATTATCAGT
TTCGTCGACACCAATCTACTTTGATAAACACTTCCCACATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_l21.g1 MSMg01no070_l21.g1 CHROMAT_FILE:
MSMg01no070_l21.g1 PHD_FILE: MSMg01no070_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:17:55 2005
         (434 letters)



>mm_chr13_7793947_7794780
          Length = 834

 Score =  770 bits (398), Expect = 0.0
 Identities = 422/434 (97%), Gaps = 7/434 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcattctgactgatcatctgccctcttcgaccagctgctgactgtgttgcctttatttc 60
           |||||||||||||||||       |||||||||||||||||| |||||||||||||||||
Sbjct: 651 agcattctgactgatca-------tcttcgaccagctgctgaatgtgttgcctttatttc 599

                                                                       
Query: 61  ttctcgtattaagaagtgctacaaacagcaaagaatgtctaacttttgacaagcccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttctcgtattaagaagtgctacaaacagcaaagaatgtctaacttttgacaagcccattt 539

                                                                       
Query: 121 gtacaaaacaagtgaacaccaggatgtgtcacagctcttaatctctgtttcttaatttcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtacaaaacaagtgaacaccaggatgtgtcacagctcttaatctctgtttcttaatttcc 479

                                                                       
Query: 181 ttttattcatgtctcatcattcctctgccaggtttgtatgaagaatgaattattgacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttttattcatgtctcatcattcctctgccaggtttgtatgaagaatgaattattgacttt 419

                                                                       
Query: 241 attacataaaataataacttatttttagatgagaatgttttgaggaaattgaatagttcc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 attacataaaataataatttatttttagatgagaatgttttgaggaaattgaatagttcc 359

                                                                       
Query: 301 ttccattaataaagacactggcatgtggaaacacatattcattcaactaagatcattcat 360
           |||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||
Sbjct: 358 ttccattaataaagacactgacatgtggaaacacatattcatttaattaagatcattcat 299

                                                                       
Query: 361 tgtcagtcaaaaagcttgagattacaacaccttttctttctgctaacattccttgtagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tgtcagtcaaaaagcttgagattacaacaccttttctttctgctaacattccttgtagct 239

                         
Query: 421 atttcttcagaaag 434
           ||||||||||||||
Sbjct: 238 atttcttcagaaag 225


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)