BAC Information

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BAC

Clone NameMSMg01-070N22
Chromosome13 (Build37)
Map Location 5,297,130 - 5,297,461
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6, LOC100039388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-070N22.T7 (MSMg01no070_n22.b1)MSMg01-070N22.TJ (MSMg01no070_n22.g1)
ACCAG294788AG294789
length695694
length of high quality
(start - end)
356 (64 - 419)331 (79 - 409)
definitionCHROMAT_FILE: MSMg01no070_n22.b1 PHD_FILE: MSMg01no070_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:05 2005CHROMAT_FILE: MSMg01no070_n22.g1 PHD_FILE: MSMg01no070_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATACGCGGAATTC
TCAACAGAGGACTCTCTAATAGCCGAGAAGCAAATAAAGAAATGTTCAAT
GTCCTTAGTTATCAGGGAAATGCATTACAATCACTAAACTCCACTCAAAT
TCCCCTGGCAGCAGTGCATTCTTTGCTACCTGCCCCAGTGTTCTGAATGA
AAGACACACGCATGAAGCTTTAAATTTTTTTTTTATTTTAGGATTTTTTT
ATTAGATATTTTCTTTATATACATTTCAAATGCTATCCCGAATGTTCCCT
ATACCCTCCCTCCGCCCTGCTCCCCTACCCACCTACTCCTGCTTCTTGGC
CCTGGCATTCCCCTGTACTGGGGCATGTAAAGTTTGCAATACCAAGGGGC
CTCTCTTCCCAGTCGTGGCCGACTAGACGATCTTCTGCTACATATGCAGC
TAGAGATACAATCTAATCCTAAATCTGATCGTGGACTAATATCCAATATA
TACAAAGAGCTCAAGAAGCTGGACTCCAGAAATTCAAATAACCCCATTAA
ATATTGGGCGTTCAGAGGTAAACAAAGAAATCTCAACTGAGGAATACCGC
ATGGCTGAAAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGA
AACGCAAATCAAAAAAACCCTGAGATTTCTCCTCTCACCAGCCAG
TGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAATATATACATGCATTTATTACTCCTGA
ATGGATTGAAAAAGTGCTGATTATGCAAACCCATTCATTACTTGTATATA
CAATGTAATGAACCTTCAAAAACTAAAATAAATAATTCAAATAAATAAAT
AATGGAATGGAAATATAATAAAATAATTCAAGTACAAACTTCTAGTCAGC
TCAGTATATTGCTTTGGGGCACTTTTTTGTGTGTTGAATTCTAAAATTTA
TATAAATATGTAATTTATCACAGTGACACAAAGGAGATCTCAGTGTGTAA
AGCTTTATAAAAGTCTGAGAACCCAAGATTTGCTGCCAGTACTCACATAA
AATCTGGGCCTTCCAGCATTCATCTGCAGTCTTGGAGCTGAAGATTTGAA
GACAGGAGGAACCTAGGAGTTTACTAGCTGTTCAATGTACTTGAACCACA
ATATCTGTGAGATGTTCTCTCTGGAAAAATATAGTGGAAAGTGACAGATA
CACTCAGATTCAACCTCTGGTTTTCACAGACTTACACTCATGATCCTACC
CCTAATCTCATACTCATATATCACACACTCACACTCTCTCTCTTTTACAT
TCTTTTTTATTCACTCTCACATCAAACCCTTTTACTTTTTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no070_n22.g1 MSMg01no070_n22.g1 CHROMAT_FILE:
MSMg01no070_n22.g1 PHD_FILE: MSMg01no070_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:05 2005
         (331 letters)



>mm_chr13_5296805_5297536
          Length = 732

 Score =  603 bits (312), Expect = e-177
 Identities = 327/332 (98%), Gaps = 1/332 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatgcatttattactcctgaatggattgaaaaagtgctgattatgcaaacccattcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tacatgcatttattactcctgaatggattgaaaaagtgctgattatgcaaacccattcat 598

                                                                       
Query: 61  tacttgtatatacaatgtaatgaaccttcaaaaactaaaataaataattcaaataaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacttgtatatacaatgtaatgaaccttcaaaaactaaaataaataattcaaataaataa 538

                                                                       
Query: 121 ataatggaatggaaatataataaaataattcaagtacaaacttctagtcagctcagtata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 537 ataatggaatggaaatataataaaataattcaagtacaaacttctagtcagctcaatata 478

                                                                       
Query: 181 ttgctttggggcact-tttttgtgtgttgaattctaaaatttatataaatatgtaattta 239
           ||||||||||||||  ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 477 ttgctttggggcaccatttttgtgtgttgaattctaaaatttatagaaatatgtaagtta 418

                                                                       
Query: 240 tcacagtgacacaaaggagatctcagtgtgtaaagctttataaaagtctgagaacccaag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tcacagtgacacaaaggagatctcagtgtgtaaagctttataaaagtctgagaacccaag 358

                                           
Query: 300 atttgctgccagtactcacataaaatctgggc 331
           ||||||||||||||||||||||||||||||||
Sbjct: 357 atttgctgccagtactcacataaaatctgggc 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)