BAC Information

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BAC

Clone NameMSMg01-071H05
Chromosome13 (Build37)
Map Location 43,876,733 - 43,876,901
singlet/doubletsinglet
Overlap genenone
Upstream genePhactr1, Tbc1d7, Gfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403
Downstream geneCd83, LOC100039432, A730030A06, EG637868, EG667157, Jarid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-071H05.T7 (MSMg01no071_h05.b1)MSMg01-071H05.TJ (MSMg01no071_h05.g1)
ACCAG295231AG295232
length663658
length of high quality
(start - end)
348 (77 - 424)168 (120 - 287)
definitionCHROMAT_FILE: MSMg01no071_h05.b1 PHD_FILE: MSMg01no071_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:51 2005CHROMAT_FILE: MSMg01no071_h05.g1 PHD_FILE: MSMg01no071_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:18:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGCCCCACCTCTCAATGTCCTGAGAGGGGAGAGAGA
CTGGAGATTGAATGCAATTCTAATCGCCTGTGATTAAATCAATTATGCCT
ATATAATGAAACCCCGATACAAATTCCCAGCACATGGAGGCTCAGGCAGG
TTCCCAGCTGTGGCACATAGCCTTGTGCTGGAAAACATTCATGGAGTCTG
TGAAGAGCTGGACACCAAGCCGCCAGTCCCAGACCTCACCTTGTGAAATT
CTTCATCTGGGTTAGCATTTGCCTGCTCTGTAAGTAAGTAATAACAGCAA
GAGGGCAGGAGAGATGGTTCTGTGGGTGAAAGTGCTTGCAATTCTGCCCC
AAGACCCATGTTTGATCCCCAGCATAGACATAGTATGAAGGAGAGGACTG
GGACTGACTTGCTGTCTTGGTACCATCCATGTGTGTGCCATGATACATGC
ACATATACACATGCACATACATATATAGATACACACATACATAGATATAC
TGACCGATTGACCGACACACCTATCGACTTTACCGATTGACCGACTGTAT
GTATGACCTACCGATATATTTATACATTGACCGATAGATAGACATATAGT
ATCATTGATAGAC
TTTATTTTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAGAGCAGAGG
CAGTAGCTTACACCTCATCCTACAAAACCATTTTTGAGATGCTTTGAAAC
TCCAGCATACAATGTCCTGGAGCGTCCTCCACTGTTAGGCACCTGTAGAG
ATGGTGGTGTCTACTTGGAGGAGAGACACAACTTTACAATAACCAAAGAT
CAAGAAGTGGCATATTGGAGCTTCTGAGGATACATTGTTAACAATCATGT
GAACTCCTAGTCACTGATTAAGGTATCTTGGGAAAATATAGTTTAGGGAA
TACATATGTAGAATAACCATCCACATTGTAAAGGTGCCTTGGAATACATT
TATCTGAAGATTAGTTAGAACACGCCTTTGTATGAAACTTAAACCATTCT
TGAAGAGTTCTATAAATGGAGAGATACACAATATTGGCAGACTTGTGAAT
CTGAGTTCTAAATTTCTTAAGTGTATGCAGTGTATAGTCTTGAGCATTTT
CTTATTATAAAATGTATGCTATATTGTTTTAGTATTGGAGGCTGACGATT
ATCTTGCTTATTTTATGGATCCTGCATCCCTGGTTCATCCTTATAGAGAG
ATGATCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no071_h05.g1 MSMg01no071_h05.g1 CHROMAT_FILE:
MSMg01no071_h05.g1 PHD_FILE: MSMg01no071_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:18:51 2005
         (168 letters)



>mm_chr13_43876533_43877101
          Length = 569

 Score =  304 bits (157), Expect = 2e-87
 Identities = 166/169 (98%), Gaps = 1/169 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacaaaaccatttttgagatgctttgaa-actccagcatacaatgtcctggagcgtcct 59
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 201 ctacaaaaccatttttgagatgctttgaagactccagcatacagtgtcctggagcgtcct 260

                                                                       
Query: 60  ccactgttaggcacctgtagagatggtggtgtctacttggaggagagacacaactttaca 119
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 ccactgttaggcacctgtagagatggcggtgtctacttggaggagagacacaactttaca 320

                                                            
Query: 120 ataaccaaagatcaagaagtggcatattggagcttctgaggatacattg 168
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaccaaagatcaagaagtggcatattggagcttctgaggatacattg 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 569
Length adjustment: 8
Effective length of query: 160
Effective length of database: 561
Effective search space:    89760
Effective search space used:    89760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)