BAC Information

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BAC

Clone NameMSMg01-072J07
Chromosome13 (Build37)
Map Location 115,336,530 - 115,336,841
singlet/doubletsinglet
Overlap genenone
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
Downstream gene4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-072J07.T7 (MSMg01no072_j07.b1)MSMg01-072J07.TJ (MSMg01no072_j07.g1)
ACCAG296091AG296092
length821700
length of high quality
(start - end)
312 (138 - 449)276 (75 - 350)
definitionCHROMAT_FILE: MSMg01no072_j07.b1 PHD_FILE: MSMg01no072_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:22 2005CHROMAT_FILE: MSMg01no072_j07.g1 PHD_FILE: MSMg01no072_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:20:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTCTTTTTTCCCTCTTCCTNACCCTCTTCCTTTTTCCTTTTTTACTT
TTTTCTATTTTTTTTTTTTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTCGAGAATCCGCGGAATTCTTGACATAGATACCTCTAGATGCTTGAT
TTTAATCACAGCTCTCGAACTGTAGCTTGAGAGAATTTTTTTTTCTTCTA
AAAATTTAACTTTGTGAGGCCTTCAGCTCCTGAGGACCAAAGATGAGAAA
AACTGAAATCTTATATAGATTTCTATGCTTTTTTTCTCAGTAAAGTCCTA
AAACAAGAAGCCATATTCAACAAGGAATGAGATGTGAGAAAGACTAGGGC
ACAAAAGTAGGAGGAAGACTAGAGGGCAAAACTTGGAAGTATATTGAAAT
ATATTGTAAACATGTATAAAATAATTAAAGATTAAATGAAGTGTGTGTGT
GCGTGTGTGAGTGTGTGTGAGTGTACGTCCTTTCTCTTTCATCTCCTTAA
ATTCTTAAATCTTTAATCCTTACCATTCTTTATGTTTTCTTCCCTCCCTA
TCTTTTATTTGATTCTATCATCCCTTTCCCTTCCTCAATACTCTTCCAAA
CTTTCTCCCTTCATTTTTTTTACAATCTTCTTTTTTTTTTTTATTAACGC
CCCCCGTTCGCTTTAATTACCACCTCGAAATTACCTTCAAAACTTTGCCT
TACCGTTTTTCGCGTTTTTCCTCTCCCTCTTGTTTTTATTGCGATTTTTT
TCTTTGCATTTTTTTATTCTAATCTAATATTACTCCGATCGGTGTCCCGT
ATAGTTGTTATTTTATTTTTT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGCATCACATTTTA
ATGGGGTTATTTAAATTTCTGGAGTTCAGCTTCTTGAGCTCTTTGTATAT
ATTGGATATTAGTCCCCTATCAGATTTAGGATTGGTAAAAATTCTTTCCC
AATCTGTTGGTGGTCTTTTTGTCTTACTGACAGTAACTTTTTCCCTACAG
AAACTTTGCTATTTTATGAGGTATCATTTGTTGATTCTTGATCTTACCGC
ACAGGCCATTGCTGTTCTGTTTAGGAATTTTTCCCCTGTGCCCATATCAT
CGACTGCACACCTAGAAGCTCTAGAACAAAAGGAAGCAAATTCACCCAAG
AGGAGCAGACATCAGGAAATAACCAAACTTACGGATGAAATCAACCTAGT
GGATACATAAAGAACTATTCTTAGAATCTTCCAAACCAGGATCTGGTTCT
TTGAGAATATCTCCCATATACATAATCCCTTAGCCAGACTACCTATAGGG
ATCAGGCACTGTATCTTTACTAACTTTTATCTTATCTGCACCAGAAGATA
TAACAACATATCCTGATGGAATCCATAACATTATGAGACCCTACTACTAA
AGGTTATACTCTATTTTCTTGGAATATCTGCATGACACGTCCTTTTTCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no072_j07.b1 MSMg01no072_j07.b1 CHROMAT_FILE:
MSMg01no072_j07.b1 PHD_FILE: MSMg01no072_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:20:22 2005
         (312 letters)



>mm_chr13_115336330_115337041
          Length = 712

 Score =  572 bits (296), Expect = e-168
 Identities = 308/312 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagatgcttgattttaatcacagctctcgaactgtagcttgagagaatttttttttctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctagatgcttgattttaatcacagctctcgaactgtagcttgagagaatttttttttctt 453

                                                                       
Query: 61  ctaaaaatttaactttgtgaggccttcagctcctgaggaccaaagatgagaaaaactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctaaaaatttaactttgtgaggccttcagctcctgaggaccaaagatgagaaaaactgaa 393

                                                                       
Query: 121 atcttatatagatttctatgctttttttctcagtaaagtcctaaaacaagaagccatatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 392 atcttatatagatttctatgctttttttctcagtaaagtcctaaaacaagaagccacatt 333

                                                                       
Query: 181 caacaaggaatgagatgtgagaaagactagggcacaaaagtaggaggaagactagagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 caacaaggaatgagatgtgagaaagactagggcacaaaagtaggaggaagactagagggc 273

                                                                       
Query: 241 aaaacttggaagtatattgaaatatattgtaaacatgtataaaataattaaagattaaat 300
           |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 272 aaaacttggaagtagattgaaatatattgtaaacatgtataaaataatcaaagattaaat 213

                       
Query: 301 gaagtgtgtgtg 312
           ||||| ||||||
Sbjct: 212 gaagtatgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)