Query= MSMg01no073_e23.b1 MSMg01no073_e23.b1 CHROMAT_FILE:
MSMg01no073_e23.b1 PHD_FILE: MSMg01no073_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:20 2005
(325 letters)
>mm_chr13_29666784_29667506
Length = 723
Score = 584 bits (302), Expect = e-171
Identities = 313/318 (98%), Gaps = 4/318 (1%)
Strand = Plus / Plus
Query: 8 gaattcatggctactgaagagacaa-cagctcgtttcctctctcctggagcaactcatga 66
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 208 gaattcatggctactgaagagacaaacagct---ttcctctctcctggagcaactcatga 264
Query: 67 ctactgatattttagttcaattacttctcaaataaaatccaggttaaagtaagcaccata 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctactgatattttagttcaattacttctcaaataaaatccaggttaaagtaagcaccata 324
Query: 127 ctgctactagacaattccagagggtagacatggaggtgagtgctaagcactggtgctggc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgctactagacaattccagagggtagacatggaggtgagtgctaagcactggtgctggc 384
Query: 187 ctcagcatcttgcatggataaatacaatgaaggtacatagatcactttgctattgctcct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcagcatcttgcatggataaatacaatgaaggtacatagatcactttgctattgctcct 444
Query: 247 ttccaaagcaacactttaggtagatccccagtgcaagctgcttacagagctataaatatg 306
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 445 ttccaaagcaacactttaggtagatccccagtgcaagctgcatacagagctataaatatg 504
Query: 307 agaagcaaagaaactgaa 324
||||||||||||||||||
Sbjct: 505 agaagcaaagaaactgaa 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 723
Length adjustment: 9
Effective length of query: 316
Effective length of database: 714
Effective search space: 225624
Effective search space used: 225624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no073_e23.g1 MSMg01no073_e23.g1 CHROMAT_FILE:
MSMg01no073_e23.g1 PHD_FILE: MSMg01no073_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:20 2005
(579 letters)
>mm_chr13_29846795_29847766
Length = 972
Score = 1027 bits (531), Expect = 0.0
Identities = 565/579 (97%), Gaps = 7/579 (1%)
Strand = Plus / Minus
Query: 1 tctattgaaaatagcttttattttatgaagctagtttttgtgtcaaaaataattttcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tctattgaaaatagcttttattttatgaagctagtttttgtgtcaaaaataattttcaga 645
Query: 61 aatcacagtagtggtaaatccttggactttgaaaactatttttctccccaagtacaaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 644 aatcacagtagtggtaaatccttggactttgaaaactatttttctcctcaagtac-aaaa 586
Query: 121 attttaaaacagaacatttgaaagaaatgatttaaaagttacgccatatgtgctggtttc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 585 attttaaaacagaacatttgaaagaaatgatttaaaagttacgtcatatgtgctggtttc 526
Query: 181 tgtgggtaacattgacaaatgctcagctaatcttttctatattggcttctcttctatata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgtgggtaacattgacaaatgctcagctaatcttttctatattggcttctcttctatata 466
Query: 241 gataaaacttttatacataatcatattaagtatctatttaaataactatatatctaattt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gataaaacttttatacataatcatattaagtatctatttaaataactatatatctaattt 406
Query: 301 tatgaatacacgtttagttataactttttctttgagtgcttagattttttgagttcttaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tatgaatacacctttagttataactttttctttgagtgcttagattttttgagttcttaa 346
Query: 361 tttactactgcaaacatagtagttaaataaatgaacatctttggctttgtttattgttaa 420
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 tttactactgcaaac--agtagttaaataaatgaacatctttagctttgtttattgttaa 288
Query: 421 cacattttttttttttaacgtaggtagattcttgaaggtgagcattgcatcaaattggac 480
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 taca----ttttttttaatgtaggtagattcttgaaggtgagcattgcatcaaattggac 232
Query: 481 cattttaaggactaactcccccactgtcactggagagctgggcttgccactcgtctgctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 231 cattttaaggactaactcccccactgtcactggagagctgggcttgccacttgtctgctc 172
Query: 541 tgtggtagcttgagtgagggggagataccttcctccctc 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tgtggtagcttgagtgagggggagataccttcctccctc 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 972
Length adjustment: 10
Effective length of query: 569
Effective length of database: 962
Effective search space: 547378
Effective search space used: 547378
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
