BAC Information

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BAC

Clone NameMSMg01-073G23
Chromosome13 (Build37)
Map Location 29,395,334 - 29,395,853
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073G23.T7 (MSMg01no073_g23.b1)MSMg01-073G23.TJ (MSMg01no073_g23.g1)
ACCAG296736AG296737
length725728
length of high quality
(start - end)
285 (36 - 320)520 (72 - 591)
definitionCHROMAT_FILE: MSMg01no073_g23.b1 PHD_FILE: MSMg01no073_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:29 2005CHROMAT_FILE: MSMg01no073_g23.g1 PHD_FILE: MSMg01no073_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:21:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTC
TCTCCAATTCTGGAGATGGAGAAGTTCAATTTCAAAGTAGTTGCAGTATC
TGGTGAGGGCCACTTTCTGTCTAATAGGAGAAAACATGAGAGAATTCACT
AGGGTTTCGGTATGTGTTCCTCAAGAGTGCATCTGTGGCGTGCACATTTG
CATATGTATGTCCTATGTATGAGCACAGCGGCCAGAGGAGGACATAAAGT
GTCCTGCTCAATCATGCTCTAACTTACAGCTTTGAGACAGTCTCCCACTG
AGCCTGGAGCTAGATGAACAGTCTGCAACAAGCAGGGACCCTCCTTGGGC
CACTCATGTTGCTACTCTCCCCCCCCCCCTTGGGTACCGGGGATTAGAAC
CCGGGGCTTTGGGCTGACACAGAAAGAACATTTCCCCACCGGGCCATTTC
TCACGCTCCTCAAGGATCTCTTTCACAAGGGCACTAATCCTGCTTCTGAG
AGCTCTCATCCGTGATCTACTTCCCCTCACACTGTACTCTCGAAGGTCTT
TATAGAACTCATAATTCTAGGAGGACAGAGCCTTTCCTATTTGCTCTGCG
GAGATATTCAGATAGGAACCGGTATCATGGACTCCTCTTGACAATGTTGG
ACATCCCTCTCTGATCTGAATATAGGTGACTATCTGACTGGGAGATGTTT
ATGTTCCTTCTCCCTGTTTCCCACA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAATGGTGTCGAGATGACCCAGAGGAGAG
GACAAGACCCAATACCACCGTCTTCACAATTTAGCCACTTCATCCAGAGA
CCATTTGAAGGATGCATTAAGGCCATCACGCTGGGGTGAAGATTCTCTTT
GGAATGAGTTCATGACACATTGGCCACACTTGAGAGGTTGGAGGCATGGG
GTGTAGATACCAGTTGTAGAATACAACTATACAGAAAACAGGCCTCTTCT
CTCCCGCTTTCCTCACTCAGTATTATTTGCATCAATACTGCCTTACAGGT
ATTAATCCAATATCATTCTCCTACTTCCACTCCCACCCCACCCCTTGAAA
TGACTCCAGCTCTGGCCATTGGGAGATCATTCACATGGCTCCGGGGTGGT
GTCCTATTGATATATGGCATCAGTTGGTAATCTGTTTGGTCTTCTGGCAC
TGCAGGAGACCCTAGCAAATCTCCTGCACTTTCTGTCCCAGATACAGAAC
GAACCTCTTCTCCTAGGATCCTGGCTCCTTTTATTACACAATGGTTTTAT
AAATCAAGGACTGTGTGTCAGGGTACTTGTTGCCTTTGAAGTGCCGATGC
TTTTTGTCTCCATAAGCAGATTGTGCCAGGAAATATGGGTGTATGATGAT
AGTAGGTCTGCAATGTCACCTTGGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_g23.g1 MSMg01no073_g23.g1 CHROMAT_FILE:
MSMg01no073_g23.g1 PHD_FILE: MSMg01no073_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:29 2005
         (520 letters)



>mm_chr13_29395328_29396247
          Length = 920

 Score =  967 bits (500), Expect = 0.0
 Identities = 515/520 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatggtgtcgagatgacccagaggagaggacaagacccaataccaccgtcttcacaatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 526 caatggtgtcgagatgacccagaggagaggacaagacccaataccaccatcttcacaatt 467

                                                                       
Query: 61  tagccacttcatccagagaccatttgaaggatgcattaaggccatcacgctggggtgaag 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 466 tagccacttcatccagagaccatttgaaggatgcaataaggccatcacgctggggtgaag 407

                                                                       
Query: 121 attctctttggaatgagttcatgacacattggccacacttgagaggttggaggcatgggg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 406 attctctttggaatgagttcatgacacattggtcacacttgagaggttggaggcatgggg 347

                                                                       
Query: 181 tgtagataccagttgtagaatacaactatacagaaaacaggcctcttctctcccgctttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tgtagataccagttgtagaatacaactatacagaaaacaggcctcttctctcccgctttc 287

                                                                       
Query: 241 ctcactcagtattatttgcatcaatactgccttacaggtattaatccaatatcattctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctcactcagtattatttgcatcaatactgccttacaggtattaatccaatatcattctcc 227

                                                                       
Query: 301 tacttccactcccaccccaccccttgaaatgactccagctctggccattgggagatcatt 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 226 tacttccactcccaccccaccccttgaaataactccagctctggccattgggagatcatt 167

                                                                       
Query: 361 cacatggctccggggtggtgtcctattgatatatggcatcagttggtaatctgtttggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 cacatggctccggggtggtgtcctattgatatatggcatcagttggtaatctgtttggtc 107

                                                                       
Query: 421 ttctggcactgcaggagaccctagcaaatctcctgcactttctgtcccagatacagaacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 ttctggcactgcaggagaccctagcaaatctcctgcactttctgtcccagatacagaacg 47

                                                   
Query: 481 aacctcttctcctaggatcctggctccttttattacacaa 520
           |||| |||||||||||||||||||||||||||||||||||
Sbjct: 46  aaccacttctcctaggatcctggctccttttattacacaa 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)