TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGTATTCGCTTCTGGTAGTTTCTCTTTACCCTCGATCCTCACC
AAAAACCTCTCAACACCATTGTAAGGCTGGAACAGGCTGGCTGTGCAGTG
GGCAATGAGTGGACATATGCTGCTGGACCAGTCTCCTTGCTTATTGTCTT
TATAGAAAACACTCATGCATGTCCTCACTCCAGTGGCTGGGAATGAATGG
CTGAGTGTGAGGAGGAACTGGAGACCGGCTCATCTGCCTTAAATGTGTCA
AGAATCAGGAGTAATGATAATAGCCTGTTCTTGCCGGGGACATGGGTCAG
GGTGACTTTATCCCTTACGGACTGGAAACCACCTTGTAAAGGTCTGTTTT
AAGCAGTGGAGCTATGATTCATTGATATCGTTGTGTTTGCAGTTTGTTTT
CTTCCCTTTGCTTTCTGAACGTGAACCACACCACCTGTTCTCGCTCTCTC
ACTAGATGGCTATTTCCAATAGTCTTCTCAGTAACGACTTATCGTCCACC
CATACAGCTGAATGCTTAGACATAGGCTTAGCTACACTATATTAATGACA
ACGTTGCCCTATCTGCTCTGCTCCTGTGCCGCCTTTCTTGCTGCTATTTT
CATTACACCTCCAGTTTAGTACACTCTGTCATTACCCTCTGTTG

CTTTTTTTTTTTTTCTTCTTTTCTTTTTTCTCCTTCTTTTTCTCTTTTCC
TNTNNNTCCCTCCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACCAGCCTCA
GAGCACCCACCACCAGCCCGGCCATCAGGCCCCAGAAGGCCCCCTGGGAA
AAGGAGAGACAGAGGAAGATCTCAAAGGACTTGCGGAGTACCCTTAAGGG
AATCCCAAGGGATCTGTCTGTGCCACCCACCTGTTCATTGGCCCTCCTCC
AGAAGACGCCCAGGATGAAGATGGCGGTGACAGGCGGCGCCAGCGAGCTG
GCCACTGACTGCATGTAGATGAAAAGCTGACCACTGTTAGAGCCCTGCTG
GACCGGGATCCAGGCTACTTTCATTCCCACCACCACCACGATGACCAGTC
TGCTGGCTGGCAGAGGCCATTCCTGCCTCAGTTAATCACTGCCCCCCCCC
CAAAATTAACTGCCTCTGGACCCCTTTGCACATTTCTTCACTGGCTACTA
TCAACCACGACCTCTTGCCCCTTTTCCTAACATGATTCCCTGTCTGCCAC
TCTGCTTTGTTCACTCTTGCCCACGTTTCGGTCCGGCAGTGTTTCCCTTG
ATTCGTTCTACCTTTCGCCCACGGTGATCGTTACAGCGCCCCTCATATCT
GTACTTTCCCCGCGCGACCTATTTATCCTCCGGGACCTTTCTGTACCCCC
CTGTTTCACCCCCC

Query= MSMg01no073_j16.b1 MSMg01no073_j16.b1 CHROMAT_FILE:
MSMg01no073_j16.b1 PHD_FILE: MSMg01no073_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:43 2005
         (237 letters)



>mm_chr13_108176011_108176646
          Length = 636

 Score =  404 bits (209), Expect = e-117
 Identities = 227/233 (97%), Gaps = 1/233 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagtttctctttaccctcgatcctcaccaaaaacctctcaacaccattgtaaggctgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gtagtttctctttaccctcgatcctcaccaaaaacctctcaacaccattgtaaggctgga 373

                                                                       
Query: 61  acaggctggctgtgcagtgggcaatgagtggacatatgctgctggaccagtctccttgct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 372 acaggctggctgtgcagtgggcaatgagtggaca-atgctgctggaccagtctccttgct 314

                                                                       
Query: 121 tattgtctttatagaaaacactcatgcatgtcctcactccagtggctgggaatgaatggc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 313 tattgtctttatagaaaacactcatgcatgtcctcactctagtggctgggaatgaatggc 254

                                                                
Query: 181 tgagtgtgaggaggaactggagaccggctcatctgccttaaatgtgtcaagaa 233
           ||||| || |||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 253 tgagtatggggaggagctggagacccgctcatctgccttaaatgtgtcaagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 636
Length adjustment: 9
Effective length of query: 228
Effective length of database: 627
Effective search space:   142956
Effective search space used:   142956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no073_j16.g1 MSMg01no073_j16.g1 CHROMAT_FILE:
MSMg01no073_j16.g1 PHD_FILE: MSMg01no073_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:21:43 2005
         (186 letters)



>mm_chr11_61486987_61487572
          Length = 586

 Score =  321 bits (166), Expect = 2e-92
 Identities = 181/186 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaccagcctcagagcacccaccaccagcccggccatcaggccccagaaggccccctg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 caggaccagcctcagagcacccaccaccagcccagccatcaggccccagaaggccccctg 260

                                                                       
Query: 61  ggaaaaggagagacagaggaagatctcaaaggacttgcggagtacccttaagggaatccc 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaaaggagagacagaggaagatctcaaaggacttgcggagtacccttaagggaatccc 320

                                                                       
Query: 121 aagggatctgtctgtgccacccacctgttcattggccctcctccagaagacgcccaggat 180
           |  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 atcggatctgtctgtgccacccacctgttcattggccctcctccagaagatgcccaggat 380

                 
Query: 181 gaagat 186
           ||||||
Sbjct: 381 gaagat 386


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)