BAC Information

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BAC

Clone NameMSMg01-073P03
Chromosome13 (Build37)
Map Location 67,357,150 - 67,357,574
singlet/doubletsinglet
Overlap geneZfp458
Upstream geneEG665974, LOC100041915, 2410141K09Rik, C330014B19Rik, Mzf6d, Vmn2r-ps106, LOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455
Downstream geneZfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137, Zfp85-rs1, LOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-073P03.T7 (MSMg01no073_p03.b1)MSMg01-073P03.TJ (MSMg01no073_p03.g1)
ACCAG297117AG297118
length685697
length of high quality
(start - end)
483 (40 - 522)425 (79 - 503)
definitionCHROMAT_FILE: MSMg01no073_p03.b1 PHD_FILE: MSMg01no073_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:10 2005CHROMAT_FILE: MSMg01no073_p03.g1 PHD_FILE: MSMg01no073_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CAAAAGATCCGTCTTTTGTCAAAAACAACAAAACAAAACAGCTATAAAAT
ATCCACAGTATTAAATATTGAGAAATCAAACTGTCCAGCGGTGGGCTGAT
CAACTGAGACGATCCCTGAAGCCCTAATATATGGAAAGGGCCCTGGCCTT
GTCAAAACCAGGAACATGCTTGACAGCGAGTAAAAGCCTGGAGCTAGGGC
ATAGGGAGCTTTTCTATGAGGACTTGGTGTACAGAGACAGAACACAGCTT
CTTCTCTAAGCAAGAGATATGCTTGGAAAAGCTTGGGGCCATAGTTTTGG
GGTATCTGTGGCCTCAGATCCTAAGAACCCTAAATTTTAGCCACATGGTG
TCTTCCATCACTGCTTCCCTCAGATTTGATGGGGCCCTGAATGTTGATCT
GACAGAATTCCAGACCAACCTGGTACCCTACCCTCACATCCACTTCCCTC
TGGCCACTTATGCCCCTGTCATCTCTACTGATAAAGCCTACCATGGGCAG
CTTTCTGTAGTAGACATCACCAATGCTTGCTTTGATCCATCCATCCCGAT
GCCGAAATGTGACTCTCACCATGCTACACGTATGTTTTGCCGCCTGCTGT
TCCCTGCCAAAGAGCTTCCCTAAGATGTCCCTGTT
NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGGAGAAAAACCCCACAA
ATGTGAAATTTGTGGCAAATCATTCTATTATCCATCAAGACTTTCCAAGC
ATAAGGTAATTCATACAGGAGAGAAACCGTACCACAGTCAAGCAAGTGGA
AAGACCCTTGATTATCCTTCAAGACATTCCAAACCTAAGACAATTAAGAC
AGGAGAAAAACCAAACAAATGTGAAATATGTGGAAAAGCCTTCTCCTTTC
CATCATTACTTTCTATACACAAGAGAATTCATATTGGAGAAAAACCCTAT
AATTGTGAAGTATGTGGCAAGGCTTTCCGAAATCCATCAAGACTTTCAAA
CCATAAGAAAATTCATACAGGAGAGAAACCATACAAGTGTGAAATTTGTG
GTAAGGCCTTTGATTATCCATCTTTACTTTCTAAACACAAGATCATTCAT
ACAGGAGAGAAGCCCTACCACAGTGAAGTGTGCGGCAAGGCCTTCAGTTA
TTCATCAAGAATTTCCAAAGATAAGAACATTTGTACAGGAGAGAAACCCT
AAATGCACCGAGTATGCGGAAACACCTCCCATTTTTCATCATTACTTTCT
AACCACAATAGATCTCATTACGGAAAAAAATCCCTACAAATGTGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no073_p03.g1 MSMg01no073_p03.g1 CHROMAT_FILE:
MSMg01no073_p03.g1 PHD_FILE: MSMg01no073_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:10 2005
         (425 letters)



>mm_chr13_67357028_67357852
          Length = 825

 Score =  822 bits (425), Expect = 0.0
 Identities = 425/425 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaggagaaaaaccccacaaatgtgaaatttgtggcaaatcattctattatccatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 attcaggagaaaaaccccacaaatgtgaaatttgtggcaaatcattctattatccatcaa 488

                                                                       
Query: 61  gactttccaagcataaggtaattcatacaggagagaaaccgtaccacagtcaagcaagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gactttccaagcataaggtaattcatacaggagagaaaccgtaccacagtcaagcaagtg 428

                                                                       
Query: 121 gaaagacccttgattatccttcaagacattccaaacctaagacaattaagacaggagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaaagacccttgattatccttcaagacattccaaacctaagacaattaagacaggagaaa 368

                                                                       
Query: 181 aaccaaacaaatgtgaaatatgtggaaaagccttctcctttccatcattactttctatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aaccaaacaaatgtgaaatatgtggaaaagccttctcctttccatcattactttctatac 308

                                                                       
Query: 241 acaagagaattcatattggagaaaaaccctataattgtgaagtatgtggcaaggctttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acaagagaattcatattggagaaaaaccctataattgtgaagtatgtggcaaggctttcc 248

                                                                       
Query: 301 gaaatccatcaagactttcaaaccataagaaaattcatacaggagagaaaccatacaagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaaatccatcaagactttcaaaccataagaaaattcatacaggagagaaaccatacaagt 188

                                                                       
Query: 361 gtgaaatttgtggtaaggcctttgattatccatctttactttctaaacacaagatcattc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gtgaaatttgtggtaaggcctttgattatccatctttactttctaaacacaagatcattc 128

                
Query: 421 ataca 425
           |||||
Sbjct: 127 ataca 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)