BAC Information

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BAC

Clone NameMSMg01-074J07
Chromosome13 (Build37)
Map Location 33,248,425 - 33,248,739
singlet/doubletsinglet
Overlap geneSerpinb9c
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301
Downstream geneSerpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074J07.T7 (MSMg01no074_j07.b1)MSMg01-074J07.TJ (MSMg01no074_j07.g1)
ACCAG297603AG297604
length691979
length of high quality
(start - end)
322 (50 - 371)---
definitionCHROMAT_FILE: MSMg01no074_j07.b1 PHD_FILE: MSMg01no074_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:59 2005CHROMAT_FILE: MSMg01no074_j07.g1 PHD_FILE: MSMg01no074_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTCCCAGTACGTTCTATTAGTAGAATGATAACAATTGTATT
CAAATACTTGTTGGATAGATCACAGCAGAAGGACCCTAGAGGATTTGAGA
AAACTAACGATCACATACTAGCCAATATGAAGGTTCACATTTAGAATACC
TACATTCAGAAAAGCTCAGGAGGGTCGGGAGTTCTAGGCCAGGCTATGCT
TCATAGTGAGATCCAGATACCTAACATCCCTCAGAAGTAATTCCCATTTT
CAAAGGCATAGAACATAAAGATGTTTTTGTTTAAGTAGCATCTGTACTAA
TTTTAGTTTTGTTTTTAATGCTATATCACTCAGAAGGTTGAAGAGCTTGC
AGACATTTTATTTTGCAGCGCCCACCTCACAACATTTTTTTCCTGCAAAG
ACATTTAAGGAGTCCTGTCTTCAGTTCTATCACTGGGAGATGGAGCAGTT
CCCCTTCACCAAGGCTCCAGAGGAGGCCAGTAATCTCTTAAACCCATGGG
TCCTGGCACATACTCGAGGTGAGAATTTTCAAGATGATTCACACTCCTTA
TTTTTAGGCCCATTCATTCCTACTACTTCCTTCCTTTCTGTCCTTGTTCT
CATATTTTTCCTCCCCCCCTCCCCCCCTAATAACAGACCAN
NNNNCCCCCCCCCCCCNNNCNNNNNNNNNNCCCCCCNNCNNCCCCCCNNC
CNCCCCCNNNNCCNNACCTCCCCCCCCCCCCCNANNNNCCCCGCCCCCCC
TTTCCCNTCCCCCCANCCCCCCCTCCCCNCCCCCCCCCCCACCCCCACCC
CCCCCCCCTCTTTTCCCTCCCCCCCTTTTATTCCCCTTTCCTCTTTTTTC
TTTTTCCCTTTTCTTCCTTCCTTCTTCCTTCCTTCCCCTTCCCCCTCCTT
TTCTTCCCCCCCTTCCTTTCTTCCCCCCCCTCTCTTTCCCTCCTATTTCT
CTCTTTCCCTCTCCCCTCTTTTCCTCCCCCTCTTCTTCTTATTTCTTCTT
CCTCCTTTTTTTTTCTTCTTTTTCCCTGTCCTTTTTTTTTCCTTCCTTTT
CTCCTCCTCCTCCTCCTCCCCCGCCCTGGTCTTCTTCTTTTTCTCTTCCT
TTTCTCCCCTTCTTTCCTTTCTTTCCCTTTTTTTTTTTCTCCCCCCCGCC
TTGTCTTTTTTCCCCTTTCTTCTNTTTNNNNNNNNNNNNNTCACGCGGCG
GCCCCTTGCGCTTCNNNTTCCTTCCCCTTCCCTTCCCTTCCTGTTTCCTC
TGTCTTTCCTCGTTCCTCCCTCCTCTTTCGCTTTCTCCTTTTCTTTCCTC
CTCTTTCCNCCCCGCGATATGCCCCTAGTTGTGGGGNTAAGGGCCCCTGG
GGNCGGGGCCCCGTCCCTCTGGGGCCCCGTACTGGCCAACACATAAGAGA
GGGTGGAAACACCCNATAACATGGGAAAGGGGAATTTTTCGGNGCGGGAA
AAAACTCCCCGGGGTTGGACACCCCTCCCCTCCCTAAACCCACAATTGGG
ATTGGGCTCCCCAATATTCCCCCCCTCCTGGGGGGAACAATTGGTGACGC
TAAAACCCCCCCCTGGGCGGTTTACACCCCTCCTCTGGGGGGGGGGGGTT
GAACTTCAATATAAAAAATGGGGGGCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_j07.b1 MSMg01no074_j07.b1 CHROMAT_FILE:
MSMg01no074_j07.b1 PHD_FILE: MSMg01no074_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:59 2005
         (322 letters)



>mm_chr13_33248411_33249129
          Length = 719

 Score =  569 bits (294), Expect = e-166
 Identities = 311/318 (97%), Gaps = 3/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcccagtacgttctattagtagaatgataacaattgtattcaaatacttgttg 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 329 gaattcctcccagtaagttctattagtagaatgataacaattgtattcaaatac---ttg 273

                                                                       
Query: 65  gatagatcacagcagaaggaccctagaggatttgagaaaactaacgatcacatactagcc 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gatagatcacaggagaaggaccctagaggatttgagaaaactaacgatcacatactagcc 213

                                                                       
Query: 125 aatatgaaggttcacatttagaatacctacattcagaaaagctcaggagggtcgggagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aatatgaaggttcacatttagaatacctacattcagaaaagctcaggagggtcgggagtt 153

                                                                       
Query: 185 ctaggccaggctatgcttcatagtgagatccagatacctaacatccctcagaagtaattc 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 152 ctaggccaggctatgcttcatagtgagatccagctacctaacatccctcagaagtaattc 93

                                                                       
Query: 245 ccattttcaaaggcatagaacataaagatgtttttgtttaagtagcatctgtactaattt 304
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  ccatttgcaaaggcatagaacataaagatgtttttgtttaagtagcatctgtactaattt 33

                             
Query: 305 tagttttgtttttaatgc 322
           ||||||||||||||||||
Sbjct: 32  tagttttgtttttaatgc 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 719
Length adjustment: 9
Effective length of query: 313
Effective length of database: 710
Effective search space:   222230
Effective search space used:   222230
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)