BAC Information

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BAC

Clone NameMSMg01-074J21
Chromosome13 (Build37)
Map Location 67,849,910 - 67,850,229
singlet/doubletsinglet
Overlap geneZfp85-rs1
Upstream geneLOC666027, LOC100042492, LOC100041947, EG382769, LOC666052, EG432768, LOC666061, Uqcrb, Mterfd1, Ptdss1, Zfp712, Zfp708, Zfp759, Rsl1, LOC674699, Zfp455, Zfp458, Zfp457, A230042K10Rik, E130120F12Rik, Zfp456, 2810487A22Rik, Zfp459, C330011K17Rik, LOC666098, 9630025I21Rik, Zfp817, Zfp87, Zfp748, A530054K11Rik, LOC328277, 3830402I07Rik, EG666137
Downstream geneLOC674597, Zfp273, BC048507, LOC666185, LOC100042687, LOC100042692, LOC674779, LOC677603, LOC100042124, LOC666222, AA414992, LOC666238, EG666245, EG666272, LOC100042223, Mtrr, LOC100042233, Fastkd3, 1700001L19Rik, Adcy2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074J21.T7 (MSMg01no074_j21.b1)MSMg01-074J21.TJ (MSMg01no074_j21.g1)
ACCAG297630AG297631
length691671
length of high quality
(start - end)
323 (45 - 367)542 (57 - 598)
definitionCHROMAT_FILE: MSMg01no074_j21.b1 PHD_FILE: MSMg01no074_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:02 2005CHROMAT_FILE: MSMg01no074_j21.g1 PHD_FILE: MSMg01no074_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGGTGGTAATAAGATTTACAGAACAGTAAAAAGTCTTGCCACAT
TCCTTGCATTTGCTGGTTTTCACGCCAGTATGGATTCGACGATGCTTATA
CAGATATGATGAACAGCTAAAGGCCTGCCCACAGTCATCACACTTATAGA
GTTTCTCTCCCCTATGAATCTGTTGGTGTTGGTGAAGGCTGGAAGAACAG
TTAAAAGCTTTGCCACATTCTTTACATTTGTAGGGTTTCTCCCCAGTATG
AGTTTGCTGGTGCTTAGAAAGAAGAAAGCGAACATTAAAGGCCATACCAC
ATTCTTCACATTTGTAAGGCTTCTCTCCAGTGTGAATTCTCTGATGGTTA
GAGAGTGTTGTGCCAACACTAAAGGCCTTGCCACATTCTTCACATTTGTA
GGGTTTCTCTCCAGTATGTACTCTTCGGTGAACAATAAGTCCTGAACAAT
TAGTAAAAGGTTTACCACATTCTTCACATTTGTAGCGTTTCTCTCCAGTG
TGGATTCTTTGATGCTTACCCAGATATGAAGAACAGTTAAAAGCTTTGCC
ACACACTTCACATTTGTAGGGTTTCTCGCCAGTATGAATTCTTTGGTGCT
GTTTAAAGCTGGAAGAATATTTAAATGATTTGCCACATTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCAGGTTTGCTGAGTTAAAGAGAAAACAGTCCTTCGTATAGAGAA
ATAAAGAGAACAATCTTAGATGGCCTTAGATGCTCTTGAGACTGCCCTGA
TGTTGTCCCCAACTTTGGGACTCCTAAATGTAAATGAGAACAACGGTTTT
GCCAGAAGTTCTTACTCAGAGATTGGGACCCTAGAAAAGACCTGTGGCAT
ACTTGCAAAAAATTAGACCTGGTGGCTGTAGGATGGCCTGCTTGTCTGCA
CATAGTGGCTTCTGGTCAAGGACGCAGATAAATTGACTCTGAGACAAAAC
TTGGCACATGTCCTAGAAAGTGTGGTTCAGCCCCCATGACCGATGGCTGA
CTAACGCTCTTGAAAGCATTATCCAACTGCTCCCCTGACGGATGGACACA
TTATCAGAGCTTTTTGTTGACTGAACGAGTGACCTTCGCTCCCCCTGCTG
TCCTCAATCTCACTACTGCCTGAGACTTCACCTACTCATCATTGTGCTGA
CATTCTGGCAGAAGAAACTCATACTCAAAATGATCTGAAGGATCAGATCA
GCCTTGGCCTGAGAGTTTGAGCTGGTACACAGATGGCAGTAGCCTGGAGG
TTAAAGGTAAGCGAAAGGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_j21.b1 MSMg01no074_j21.b1 CHROMAT_FILE:
MSMg01no074_j21.b1 PHD_FILE: MSMg01no074_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:02 2005
         (323 letters)



>mm_chr13_67849706_67850429
          Length = 724

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%), Gaps = 1/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggtggtaa-taagatttacagaacagtaaaaagtcttgccacattccttgc 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggtggtaaataagatttacagaacagtaaaaagtcttgccacattccttgc 264

                                                                       
Query: 64  atttgctggttttcacgccagtatggattcgacgatgcttatacagatatgatgaacagc 123
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgctgggtttcatgccagtatggattcgacgatgcttatacagatatgatgaacagc 324

                                                                       
Query: 124 taaaggcctgcccacagtcatcacacttatagagtttctctcccctatgaatctgttggt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taaaggcctgcccacagtcatcacacttatagagtttctctcccctatgaatctgttggt 384

                                                                       
Query: 184 gttggtgaaggctggaagaacagttaaaagctttgccacattctttacatttgtagggtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttggtgaaggctggaagaacagttaaaagctttgccacattctttacatttgtagggtt 444

                                                                       
Query: 244 tctccccagtatgagtttgctggtgcttagaaagaagaaagcgaacattaaaggccatac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctccccagtatgagtttgctggtgcttagaaagaagaaagcgaacattaaaggccatac 504

                               
Query: 304 cacattcttcacatttgtaa 323
           ||||||||||||||||||||
Sbjct: 505 cacattcttcacatttgtaa 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 724
Length adjustment: 9
Effective length of query: 314
Effective length of database: 715
Effective search space:   224510
Effective search space used:   224510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)