BAC Information

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BAC

Clone NameMSMg01-074K15
Chromosome13 (Build37)
Map Location 78,659,929 - 78,660,206
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675063, D13Mgi7, 1110033M05Rik, 1700013G10Rik, Nr2f1, EG666856, LOC268676, LOC100042683, LOC622365, LOC100043052
Downstream geneEG666883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074K15.T7 (MSMg01no074_k15.b1)MSMg01-074K15.TJ (MSMg01no074_k15.g1)
ACCAG297666AG297667
length822685
length of high quality
(start - end)
41 (78 - 118)279 (76 - 354)
definitionCHROMAT_FILE: MSMg01no074_k15.b1 PHD_FILE: MSMg01no074_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:06 2005CHROMAT_FILE: MSMg01no074_k15.g1 PHD_FILE: MSMg01no074_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:23:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNATCC
GCGGAATTCCATATATGTCGTGTGATGTGTGTGCGTGTGTGTATATGTCG
TGTGTGTATATATATCGTGTGTGCTATCCCCCATTAACTACCTCGCACAA
TAACTTATCGTCAACTCCCATCTCCCCTTACCTTCCACCCACCTTCTTCA
TCCCATACATCTCTCCCTCATTAATTCTTGTCCTACCAACATATCTTCCT
ACACTACAACTTCTCCTCCCTTCATCACCTCCATTTTCATTTCTCCCGCC
CCCCAAACATCTTCACCGCTCCTCTCCTTCTCTTCCTCCTCATCTATTTT
CCTTCTTTAGACACCCCCCCCACCCTTTCAACTTCGCTTATTCATATACT
TCACTACCCTCACAAATACCCCCAACAAAAAATGATGTTTATTTACACCA
TTATCGTTGGTGCCCCCCCAAAAAACAATAAATTAATAAATACAACCCGT
CCTTTACAACATAAACCGCATTACCAACTTCCCCCCCAACCTTATCATAA
CGTCACATAACTCCCCCCCCCGTCCACTTATCCGCTTAAATAATCCCATC
ATACACCCTTATACTATTTCCCGCCCTTCCACAATTCCCCTTCATTCCTT
TTCCCACACCCACCCCCCCCTTTTCTTTACACACCTCGTTCCTAACACTC
CCGCCACGTAGCTTCTTTCCACCCTTCATCTAACTTTACCCATACTCCCC
CCTATCCTTTTATTTCCCTGTCCAAATTTTTTCGTCCACATCCCCGCCTT
TTCCTTTATCACACTTATCCCC
NCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTATATTTGATAGTTTATGTTGGA
GAGATTTAGTAACCTTTTTGCAAAAATGAGAATATATTTAACTTTTATCC
ATTTTAAGTCTAATTTATACTCATATATAGACCTATCTATCTATCAATCA
TATATTTAGATTCCTAGATGCCTTAGTATAATATTCCTGTATTACATTTT
TTTCTGGTTTTTTTTTTGAGGGGGGTATAATTTATTCACAAGTTAAATTG
GGAAGCTGGAAACTTCTTCTGTGTTCATGTAATGTTTAATTTAAATTATT
TCCTTTTATTTCCCCCGCCCTACGCCGCTATGGACAATCTGTGTTTCTTG
GTATATGTCCCACCCCTTTATTTAACAAAATAGAAATAGAAGAATAAATA
TAAAAGCGCCACATGTGAAGCAGAGCTAGAAGACTTTGACAGACATAACA
GCATAGCTGCTTCATCTTTACAGCATTTGATTCAGGGACACTGCAACTCA
CAAAAAATTTTCATTTTTGAACATTTAATTCCCTACTTCCATAATTCCCA
GAACAACTCAATACAATACTCCATGGACAACCGCCCAGTTCAATCTTCAC
TCCCATAAATTTCCTGTGATGAACGGATCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_k15.g1 MSMg01no074_k15.g1 CHROMAT_FILE:
MSMg01no074_k15.g1 PHD_FILE: MSMg01no074_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:06 2005
         (279 letters)



>mm_chr13_78659729_78660407
          Length = 679

 Score =  485 bits (251), Expect = e-142
 Identities = 272/279 (97%), Gaps = 2/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatatttgatagtttatgttggagagatttagtaacctttttgc-aaaaatgagaata 59
           ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||
Sbjct: 201 tttatatttgatagtttatgttggagagatttagtaaccttcttgttaaaaatgagaata 260

                                                                       
Query: 60  tatttaacttttatccattttaagtctaatttatactcatatatagacctatctatctat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttaacttttatccattttaagtctaatttatactcatatatagacctatctatctat 320

                                                                       
Query: 120 caatcatatatttagattcctagatgccttagtataatattcctgtattacatttttttc 179
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 caatcatatatttagattcctagatgccttagtataatattcctgtattacatttttt-c 379

                                                                       
Query: 180 tggttttttttttgaggggggtataatttattcacaagttaaattgggaagctggaaact 239
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgggtttttttttgaggagggtataatttattcacaagttaaattgggaagctggaaact 439

                                                  
Query: 240 tcttctgtgttcatgtaatgtttaatttaaattatttcc 278
           ||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 tcttcagtgttcatgtaatgtttaatttaaattatttcc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)