Query= MSMg01no075_d08.b1 MSMg01no075_d08.b1 CHROMAT_FILE:
MSMg01no075_d08.b1 PHD_FILE: MSMg01no075_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:49 2005
(246 letters)
>mm_chr13_94098981_94099627
Length = 647
Score = 470 bits (243), Expect = e-137
Identities = 246/247 (99%), Gaps = 1/247 (0%)
Strand = Plus / Plus
Query: 1 taggtttgttac-caccaagaatataattctgagctgacctggtgggaaaggtttgcatc 59
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggtttgttacacaccaagaatataattctgagctgacctggtgggaaaggtttgcatc 260
Query: 60 aatgaagatttgtactggtttcctttggaaagaaggaattattttataggtaggagtgtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaagatttgtactggtttcctttggaaagaaggaattattttataggtaggagtgtc 320
Query: 120 tccaagtctttattttttgatgaatctaatattcctacagctacaagtattttttaactg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaagtctttattttttgatgaatctaatattcctacagctacaagtattttttaactg 380
Query: 180 ggactaattttaaaattaagacatttcaacgtctttcaagtctcttggctcagatttact 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactaattttaaaattaagacatttcaacgtctttcaagtctcttggctcagatttact 440
Query: 240 tatgtgt 246
|||||||
Sbjct: 441 tatgtgt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space: 151206
Effective search space used: 151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_d08.g1 MSMg01no075_d08.g1 CHROMAT_FILE:
MSMg01no075_d08.g1 PHD_FILE: MSMg01no075_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:23:49 2005
(517 letters)
>mm_chr13_94186846_94187763
Length = 918
Score = 994 bits (514), Expect = 0.0
Identities = 517/518 (99%), Gaps = 1/518 (0%)
Strand = Plus / Minus
Query: 1 tgattctggatatgtacggcaaaacaacccctttcctccttaggttgcttttgtatgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 tgattctggatatgtacggcaaaacaacccctttcctccttaggttgcttttgtatgtgt 577
Query: 61 ttcactgcagcaacaggactatgacactcttctac-aacacatgttgggaatttgagatg 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 576 ttcactgcagcaacaggactatgacactcttctacaaacacatgttgggaatttgagatg 517
Query: 120 tgaaaagattatattggttaggttttccttggtttattttttctaacaaagtgaaaagga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tgaaaagattatattggttaggttttccttggtttattttttctaacaaagtgaaaagga 457
Query: 180 atggaatgaaattcagacattctttgaactaaacaataaaaagaataagagcttcttgag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 atggaatgaaattcagacattctttgaactaaacaataaaaagaataagagcttcttgag 397
Query: 240 agtgcgctcttcctctagctgtcgaatttgtctgttctaacggaagccaggctcacagga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agtgcgctcttcctctagctgtcgaatttgtctgttctaacggaagccaggctcacagga 337
Query: 300 aaacaaaggctcatcactgcttgctgtgagcctcaagactaagccgaatctcaagggcac 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaacaaaggctcatcactgcttgctgtgagcctcaagactaagccgaatctcaagggcac 277
Query: 360 agggtgttactatgtggctctggctgtcccagaactcatgtagaccaaaatagccataaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 agggtgttactatgtggctctggctgtcccagaactcatgtagaccaaaatagccataaa 217
Query: 420 ctcgagagattttcctgtctctgcctgcccagtgctggaattaagagagcatcaccagca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctcgagagattttcctgtctctgcctgcccagtgctggaattaagagagcatcaccagca 157
Query: 480 cctggcttccaaaactcttcttgaaccttctatcaggc 517
||||||||||||||||||||||||||||||||||||||
Sbjct: 156 cctggcttccaaaactcttcttgaaccttctatcaggc 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
