BAC Information

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BAC

Clone NameMSMg01-075M04
Chromosome13 (Build37)
Map Location 30,004,915 - 30,005,198
singlet/doubletsinglet
Overlap geneE2f3
Upstream geneSox4, LOC100041135, Cdkal1
Downstream geneMboat1, Agtr1a, Uqcrfs1, Dusp22, LOC666443, Irf4, Exoc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M04.T7 (MSMg01no075_m04.b1)MSMg01-075M04.TJ (MSMg01no075_m04.g1)
ACCAG298500AG298501
length821693
length of high quality
(start - end)
201 (45 - 245)285 (73 - 357)
definitionCHROMAT_FILE: MSMg01no075_m04.b1 PHD_FILE: MSMg01no075_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:30 2005CHROMAT_FILE: MSMg01no075_m04.g1 PHD_FILE: MSMg01no075_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGCATCCGCGGA
ATTCAAAAGGTTACCCGCTTTTGTTATGCAAACCTTGTTCCTTAATTTAA
AACTATTCGGTTAAATCAAAATGGCACAACCAATTACTGGAGGGATTAGA
GGCAGTGGGTTTCGAGTAACCTGGTTGAGTGGGAGCAGAGGTGAGAAAGG
AGAGGACTGAGGAGAAGAGGGAAGGCCCTGTGAGAGGAGATGAGCCTTGA
GTACCTGGCCAGGAGAAACTATAAGCAAGGGGGTGGGGGTGGCGCCCTCC
CCCGTCTTTCTCGCCACCCCTTTTTTTTTCCCCCCTCTCCTCCCCCGTTT
TCCCTTTCCCCCTTCCTCTCTTTTCTTCCCCCTCTTTTTCCCCCCCCTCT
CATGTTTTTTCTCCCTTTTCTTCTTTTCTCCCCCCCCCTCCCTCCCTTTC
TCTCTCCTCTCTTCTACCCGCCCCCCCTCGCCTTTTTCCCTCCTCCCTTC
TTATCTCGCCCTTCCACCCCCCCCCCGCTCTCTCTCTTTCCTCTCCATTT
CCTCCCCCCCCCCACCGTAGCCTTTTTTTCTTCCTTCTTACCCTCCCCTT
TCCCCCCTCTCTCTCTCTCTTCTATTCTCTCTTCCTTTTCTCTTTCCACC
CCCTCTCCTTTGTCTCGCTTTTTTTTTTTTTTTCCCCCCTCCCCTATCCT
CTCTCACACTTCTCTTTCCCTCCCCCTCCCTCTTTTTTCACCTCCTTTCC
CCTCCTACTTTTTTACGCCCCCATTTTCTTTCACCTCCTTCCTCCTCCCC
CACCCCCCCCACTTTATTCTN
TCAATGAAGTGGGAGGCCTGGCGGCCGCCTGGTTCCGATTGAGGTGAACT
ATAGAAGTTTCAAAAATTCCAAACTGTGCTAGGCAGAGAGCTACTTCTAA
AATCCATAGTGGGGACGCCCGTACACAAGGCAATCAAAATAAAAATTCTC
AAGTGGTTCAAACTGATCACAGCCACCAGATAACAAATTGTGAAAAAGGA
AAGTTGAAGAGAAAACAGGGCACCAACGCCTGCTGTGACCCAAACACCCC
TCTAAATTGAAACCAGACGTTTTGGGCATTCAATAAACAGGGAAATTTTG
AACCCCTTTATTTTTTTTTTTATGGAAATAAATGAAGAGGAATTAGCAAG
TTCTTGGTAGGCGTCCATGATGCTTGCGTTCAGGCGTTCTGGAGCGTTCT
CTATGGATGCCCCCCGTCACTGTCTCCTTACCTCTATTGAGTCAGGCACT
TCAAGTCTCGTTTCTGGAGGGGCTTTCACAACTATAACAGTTTGGTCTTT
AAGGCCACTAATTTTTCGAATATCTTGATATGTAACATAAGCTAACGTAC
GAAGCGTTAAGGAAACCTTCTATCACAGTTGCCACAGACGTACCTATCAT
GAGCACCACGTATTAGAACTCAACAGTTTACCCCATGGCTTCCCGAGTTA
TAATACGCTTGCCTCCCCCCTTGGCATCTTCACGTAAACCGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m04.g1 MSMg01no075_m04.g1 CHROMAT_FILE:
MSMg01no075_m04.g1 PHD_FILE: MSMg01no075_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:30 2005
         (285 letters)



>mm_chr13_30004713_30005398
          Length = 686

 Score =  466 bits (241), Expect = e-136
 Identities = 273/291 (93%), Gaps = 15/291 (5%)
 Strand = Plus / Plus

                                                                       
Query: 3   tgtgctagg-cagagagctacttctaaaatccatagtggggacgcccgtacacaaggcaa 61
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 203 tgtgctaggtcagagagctacttctaaaatccatagtggggacacccgtacacaaggcaa 262

                                                                       
Query: 62  tcaaaataaaaattctcaagtggttcaaactgatcacagccaccagataacaaattgtga 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tcaaaataaaaattctcaagtggttcaaactgatcacagccaccagataacaaattgtga 322

                                                                       
Query: 122 aaaaggaaagttgaagagaaaacagggcaccaacgcctgctgtgacccaaacacccctct 181
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 323 aaaaggaaagttgaagagaaaacagggcaccaaagcctgctgtgacccgaacacccctct 382

                                                                       
Query: 182 aaattgaaaccagacgttttgggcattcaataaacagggaaattttgaacccctttattt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 383 aaattgaaaccagacgttttgggcattcaataaacagggaaattttgaaccc-------t 435

                                                              
Query: 242 ttt----ttt---ttatggaaataaatgaagaggaattagcaagttcttgg 285
           |||    |||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tttaaactttaggttatggaaataaatgaagaggaattagcaagttcttgg 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 686
Length adjustment: 9
Effective length of query: 276
Effective length of database: 677
Effective search space:   186852
Effective search space used:   186852
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)