BAC Information

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BAC

Clone NameMSMg01-075M08
Chromosome13 (Build37)
Map Location 18,723,316 - 18,723,553
singlet/doubletsinglet
Overlap genenone
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik, Pou6f2
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075M08.T7 (MSMg01no075_m08.b1)MSMg01-075M08.TJ (MSMg01no075_m08.g1)
ACCAG298508AG298509
length716684
length of high quality
(start - end)
34 (74 - 107)235 (75 - 309)
definitionCHROMAT_FILE: MSMg01no075_m08.b1 PHD_FILE: MSMg01no075_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:31 2005CHROMAT_FILE: MSMg01no075_m08.g1 PHD_FILE: MSMg01no075_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGAGCATCCGCGGAAT
TCACTTTGACCCACCAACTGGCAGTGGAGCCCCTCAACGTGGCTTTAAGT
TAGGGAAGAACTGAGGTTATCAGAATTTGGCCAGTCTGCTTTGTTTCCCT
AAAAACAAAAGTCACAATGAAGCCAGATTATGTACTTTACAAAAGCTAAC
TGATAAACCCAGTAAGGACCACACGGCAAGATTAGGATCATTCCCTTTCT
GCTTCCTTCTTCAAACAAGGCACAAACTTGACTGCCTTCGAGGTTACAGC
TTCCCCAGATGTGATACTCTCTATTTATCTACCTACCAGAACAATCTCTA
TTTCACAATCCCTTATTACATCCGCCCGTGTGTACGCGTGTCATATAACA
ACCTGAACGTGTCAATTCTCTCTATTGCGCCTTGCGCATCCAACTCTCGT
CACCCTGCTTGTTGCCCTCCACAAACTACGCCTCTTCCATGGCCCCCAAG
TTTACATCTAACAATCCCCCTACCTCACTCTGTTGTATTCATCCCCCCCC
TGCTCCCCGCCCTTTTCCTACCCTCTTCCTAACACTCTTCATAATGCATC
TTCTATTACACCCCACTTCCTATTCCGTGCACGTCCTGCCGAACTCCTTT
GCACTCCCTTCCTCCCTTTATACACCTAATTTTTTCGCTTATCATCTCGC
TCAACCCCTTCTTCTT
CATGCAGTGGGTAGCCTGGCGGCCCCTGGCTTTCTCATTAGGTGAACTAT
AGAAGATTTCGAGAATCAAAATTATATCAGACATTTGTCCTGATTTCTTT
ATTTGACACTCACAACTATTACATTTATATTTCTTATTATTATATTTATT
TTATAATGGCATTAAAGTAATTGTGTGCTATTTATTCCTCATAAATTTTA
ATAGCTCAGAAAATGATATGTAAAATTCCTATTCCTTCCACATTCATTTA
TTTATTGCTTCTAGTTGAAATGAACTCCATCTATGGGAAGCTTGCATTTT
TTTTTCTCTTATTAGTCTTGTTTCATTTTATAAGTGTGTTGTTTGAAGCT
CTGTCTCTGTCACCACCTGCAACACTGAGTGGCCTTTAAAGTCTACTGGA
TATTTGACCCCACATGATTTTCTCTAACCTGGGCTCTGCTTGGCTGTGTG
TCTGTGTGCGTGAGAATGTTTCTTCCCACTACTGTGGTTATCATTGATGA
AAACACAAGTGGTCTTGTGGAATTTAAGGATATCTCACTTTGTTGACAAA
CTCTTATAATTTAAGTACGATAATTCATAAAATGTGGCAACCCCCATTAA
CACTAATGTTCGAGTCTGAGTGAATCTTCTTTGACTATGAATATATCGCT
GCTTTCGGAAAACCTGTGTTTCTCTCCATGTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_m08.g1 MSMg01no075_m08.g1 CHROMAT_FILE:
MSMg01no075_m08.g1 PHD_FILE: MSMg01no075_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:31 2005
         (235 letters)



>mm_chr13_18723117_18723753
          Length = 637

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%), Gaps = 3/238 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcagacatttgtcctgatttctttatttgacactcacaactattacatttatatttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tatcagacatttgtcctgatttctttatttgacactcacaactattacatttatatttct 259

                                                                       
Query: 61  tattatt-atatttattttataatggcattaaagtaattgtgtgctatttattcctc-at 118
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 260 tattattaatatttattttataatggcattaaagtaattgtgtgctatttattcctcaat 319

                                                                       
Query: 119 aaatttt-aatagctcagaaaatgatatgtaaaattcctattccttccacattcatttat 177
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaattttaaatagctcagaaaatgatatgtaaaattcctattccttccacattcatttat 379

                                                                     
Query: 178 ttattgcttctagttgaaatgaactccatctatgggaagcttgcatttttttttctct 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttattgcttctagttgaaatgaactccatctatgggaagcttgcatttttttttctct 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 637
Length adjustment: 9
Effective length of query: 226
Effective length of database: 628
Effective search space:   141928
Effective search space used:   141928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)