BAC Information

Click to search

BAC

Clone NameMSMg01-075N19
Chromosome13 (Build37)
Map Location 58,520,636 - 58,520,970
singlet/doubletsinglet
Overlap genenone
Upstream geneSpock1, Klhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1
Downstream geneLOC100041086, Slc28a3, LOC100041510, LOC435361, Ntrk2, LOC100041533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075N19.T7 (MSMg01no075_n19.b1)MSMg01-075N19.TJ (MSMg01no075_n19.g1)
ACCAG298577AG298578
length673675
length of high quality
(start - end)
533 (44 - 576)342 (77 - 418)
definitionCHROMAT_FILE: MSMg01no075_n19.b1 PHD_FILE: MSMg01no075_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:38 2005CHROMAT_FILE: MSMg01no075_n19.g1 PHD_FILE: MSMg01no075_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCCATGGCATCCGAACACATGGCGTATATACAAGCACACATATGCACA
AATAAGAATTTTAAATCAGTCTTTAAAAAACACAATTGTATATAAAGGAT
TAACAAGGATATGGAGAAATTAGAATCCTTATGCATTTCTGGTAAAATAA
CATTTGCTTTAGAAAAGCTTGGAAGTCACAGAAAAAGCCAAAACAATTAT
ATAATCAGCAAATCTACTCTTAAGTTATTCAAAATACTCAAAGACCTAAA
AGCATGACCACAGATACCTGTATACCCATACACAAAATGTAGCCTCTCTC
TGCATGTAAGAGAATGTAGGACAATGGATCAAATTCTGTAAATCTTGTAA
CAGGGAGGAACCTTGAAAACATTATGTTAAAAGAAATAAACTAGGCTGGA
GAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAG
TTCAATTCTCAGCAACCACATGGTGGCTCACAACCATCTGTAACAGGCTC
TGATGCACTCTTCTAGTGTGTGTCTGAAGATAGCTGCAGTATATTCATAA
ATAAAGAATAAATAAATCTTTAAAAGAAAACAAAGAAATAAGACAGAAAA
AGACAAAAACTGTGTGACTCACT
NCCACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATCCTCAGTGCCCACATGGTGGA
AGGAGAGAATGGAATCTTCCTGTAAGTTGTCCTCTGACCCCCACATCTGC
AGAGGTGGGACACATGGTGGGGGCACATATATAAATAAATATGACATCTA
AAAGGACCTGAAAGTAAGAGGGGCTGTTAGGAAGCAGACAGGTTGTCAGT
GGTGAGAAGTGCTAAGAGCAGGCAGGAAGTTGCCATCAGATGCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGT
GTGTGTGTGTGTGTGTGTGTGTGTGAATTTGTCAGAGAACAAGCTTAATT
TTAAAAATACATAAAAATACCCCATGTATTAATTTCTATGGCAGTTGCTA
TGGGCTGGCTACATCAACAAGTATGTCTAATCTTCTGTTTTATGGTTCGT
TTCTCTTTATAGAGGCTTTAGAAACTGGATTTTTGCTTTCCTGGCCTTGC
TAACAGGCACAGATAGATGTTTAGTGTAGAGAGATATTCTTGTGGGCTTC
TGAGAAATGTTTTTGCTTTCCTTATTACTGTGTGTGTGAGTGTGTGTTGC
GCGCGTGTTCCTCCCTTCCCACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_n19.g1 MSMg01no075_n19.g1 CHROMAT_FILE:
MSMg01no075_n19.g1 PHD_FILE: MSMg01no075_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:38 2005
         (342 letters)



>mm_chr13_58520487_58521227
          Length = 741

 Score =  596 bits (308), Expect = e-175
 Identities = 331/342 (96%), Gaps = 7/342 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcctcagtgcccacatggtggaaggagagaatggaatcttcctgtaagttgtcctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aatcctcagtgcccacatggtggaaggagagaatggaatcttcctgtaagttgtcctctg 425

                                                                       
Query: 61  acccccacatctgcagaggtgggacacatggtgggggcacatatataaataaatatgaca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 424 acccccacatctgcagaggtgggacacatgg-gggggcacatatataaataaatatgaca 366

                                                                       
Query: 121 tctaaaaggacctgaaagtaagaggggctgttaggaagcagacaggttgtcagtggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tctaaaaggacctgaaagtaagaggggctgttaggaagcagacaggttgtcagtggtgag 306

                                                                       
Query: 181 aagtgctaagagcaggcaggaagttgccatcagatgctctctctctctctctctctctct 240
           ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||
Sbjct: 305 aagtgctaagagcaggcaggaagttgccatcagatg------ctctctctctctctctct 252

                                                                       
Query: 241 ctctctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtga 300
           |||||||||||||||||||||||| | | | |||||||||||||||||||||||||||||
Sbjct: 251 ctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtga 192

                                                     
Query: 301 atttgtcagagaacaagcttaattttaaaaatacataaaaat 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 atttgtcagagaacaagcttaattttaaaaatacataaaaat 150


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)