BAC Information

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BAC

Clone NameMSMg01-075O06
Chromosome13 (Build37)
Map Location 73,697,001 - 73,697,184
singlet/doubletsinglet
Overlap geneSlc6a3
Upstream geneIrx2, LOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36, Aytl2
Downstream geneClptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670, LOC634386, LOC100042547, LOC666683, LOC547136, BC012278, LOC434490
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075O06.T7 (MSMg01no075_o06.b1)MSMg01-075O06.TJ (MSMg01no075_o06.g1)
ACCAG298599AG298600
length736833
length of high quality
(start - end)
57 (76 - 132)184 (82 - 265)
definitionCHROMAT_FILE: MSMg01no075_o06.b1 PHD_FILE: MSMg01no075_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:40 2005CHROMAT_FILE: MSMg01no075_o06.g1 PHD_FILE: MSMg01no075_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACCGCGGAA
TTCTGTTTCTTTCACGTCCCCTTCACTGTGTTTCCTTCTAGCCACTTCCA
TTTGAAAATACAGGCGCGTGTGACCTTGCTTTGTCTGCAGGAAGATTAGT
AAGCCAGTGAAAAGGGTCCGAGCCCAGTGACTTTTTAATAGCGGCTCCTT
TTTGCATAAGAAGTCAATTACACTGCAATTACACATGACCAGACCCATAC
TTACTTGTAAGCCCACTCCCAGGTCATGGTCCAGATCTCAAACGCCGAGA
TGCAGGACTCTTACGTACCTATTTTTTATAGTCCTGCTGGAGAACCTTGC
CCAGCCTAGTCTGGTGATACTCCCCGAGATAGCACTCTCTGGCAAGTCAC
ACTCCGGACTTGAATGCACAACGCCTCCTGACGTCAAGGATACTGTTGTC
CCTACAAGACGTTTGGAAATCCCCACCACCTACAGGATCGCCTCTAACGC
TTGTTCTCCGTGCATCACACCCCCCACTACTTGTGTGTTCCGCTTCGTCC
CCTCCACCCCCGCTCCTCGTTATCCTCCCCCTGTTCCTAGAAACCTCTCG
TTTCTCCAACTTTCTTTTTCCCCCCCCTTCATCTTTTCCACTTCTTGTTT
CCACCCTTATATTACCATCCCCGGCCCCTCTTTTCCGACCATTATTTTTC
CCACGGCTTGTTCCCTCCCTCCCCCGTTAATCTATG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCAAAAAAACAAAAGACAAAAAAAGTAAAGAGTATTGG
AGTCTTAGCAAGCAGACGTGCAGTCCACAAAAGAAAAGCAGAGAGACACT
GCATGTGTGAGAAGGCGCTTTAAAAAACAAAGCAAATCACAAAGATGAAA
GGTTGTGAGAAATTAAGATGGCAGTAAGATTGGATGGATGGATGGATGGA
TGGATGGATGGATGGATGTTCCCCCCCCTTTTTCCTCTCTTTCCCCTCCT
TTTTCCCCCCCCCACCAACTTTTATATTTTTTCCCCCTTCTTCCCCACCC
TTCTTAATCTCTATTTTCTTTTTTCCCCCCCCTCCCCCCCCTCACATTTT
CATATTTTTTACCAATTGAATAACTTCTTTTCTTCCCCCCCTTTCATAAC
TATTTTTATCTCCCTTTTTTTCTTCCTGCTCCTTTATTCCCCCCCTCCTC
CTTCGACTTTCTTTTTTTTTTACTCTGTCTCTTCTCACACCATATTCCTT
CTCTAACTTATCCCCCTTCTCTACTTTATATTTTTTTTCTAAGCCCTCTC
ACTCACATCTATTTTTCTCTCTCCCCTTTCCTGTTTTCTCTCGTTTCATC
TCATTCCACACATTCTTTATCATCTCCCACCCCCCTTTCCATTCTTATCC
CCCACCTCCCTCATCTATCTCCCTTCCCACCACTCCATCCTCATCCTCCC
CCCTTTTTCTTTTCTCTTCTCTACTCCCCTTAATCATTCTCTCTTCCCCT
CTCTTTCCTTCTTATCTCTCCCTTCTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_o06.g1 MSMg01no075_o06.g1 CHROMAT_FILE:
MSMg01no075_o06.g1 PHD_FILE: MSMg01no075_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:40 2005
         (184 letters)



>mm_chr13_73696801_73697384
          Length = 584

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagtaaagagtattggagtcttagcaagcagacgtgcagtccacaaaagaaaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagtaaagagtattggagtcttagcaagcagacgtgcagtccacaaaagaaaagcag 260

                                                                       
Query: 61  agagacactgcatgtgtgagaaggcgctttaaaaaacaaagcaaatcacaaagatgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagacactgcatgtgtgagaaggcgctttaaaaaacaaagcaaatcacaaagatgaaag 320

                                                                       
Query: 121 gttgtgagaaattaagatggcagtaagattggatggatggatggatggatggatggatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtgagaaattaagatggcagtaagattggatggatggatggatggatggatggatgg 380

               
Query: 181 atgg 184
           ||||
Sbjct: 381 atgg 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)