BAC Information

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BAC

Clone NameMSMg01-076F11
Chromosome13 (Build37)
Map Location 110,593,485 - 110,593,632
singlet/doubletsinglet
Overlap genePde4d
Upstream geneLOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076F11.T7 (MSMg01no076_f11.b1)MSMg01-076F11.TJ (MSMg01no076_f11.g1)
ACCAG298942AG298943
length702731
length of high quality
(start - end)
633 (68 - 700)149 (75 - 223)
definitionCHROMAT_FILE: MSMg01no076_f11.b1 PHD_FILE: MSMg01no076_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:17 2005CHROMAT_FILE: MSMg01no076_f11.g1 PHD_FILE: MSMg01no076_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACATAATACCAGAGACACCGAATCTTATAGAGAAGAAAGTGGGGA
GAAGCCTCGAAGATATTGGCACAGGGGAAAAATTCCTGAATAGAACAGCA
ATGTTCTATTCAGTGCTGTAAGTGCTGTAAGATCGAGAATTGACAAATGG
GACCTCATAAAATTGCAAAGCTTCTGCAATGCAAAAGACACTGTCAATAA
GAGAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAAT
CAGATAGGGGACTAATACTCAATATATATAAAGAACTCAAGAAGGTGGAC
TCCAGAAAATCAAATAACCCCATTAAAAATAGGGCTCAGAGCTAAACAAA
GAATTCTCACCTGAGGAATACTGAATGGCTGAGAAACACCTGAAAAAATG
TTCAACATCCTTAATCACCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAATCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTTCTCCATTGTTGGTG
GGATTGCAAGCTTGTACAACCACTCTGAAAATCAGTCTGGCTGTTCCTCA
GAAAATTGGACATGGTACTACCGGAGGATCCCACAATACCTCTCCTGGGC
AT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGGGGTAAGGAAGATTAGGGG
AGGGGAGTAAAAGCTTGGAGGCAGCAAACCCAGGCATCATCCTATACCTT
CTCCAACTTAGTCACCCAAAGCACTGGTGGAAAACCACTGGACCTGCTTG
AGTCTCACTTCGACGACTGTGAAGGGGCGTGGGGTACAACTGGATTATTC
CTGGGACCTATTCTGGTGGATGGTGAGTGCCTGCTACATTTTTACTCTTT
TCTCCCCCCTTTGCCCACTTTCACTTTCTCTCTATGACTATCCTCTGCTC
ATTACCTCGCTCCTCCCTGCCAAGATATTTTACTTACTCTACATATATGT
CTACGTATCTCTGCCCCCCATCTCGCTATTTATCGTCCTTCCTTATTTCT
CCCTCCCTATACTACACCTTCTCCCTATATTTCCTTTTACCCCCCTATCC
CCCCACTCTCTCTCCTTATATCTTTATACTCCTTTTCTCTCCTATACTCT
TCTATTCACCCTATCCCTCACCTTCATATCCTTCTCCTTAATTCTTATCT
CTTTCCATTCACCCCTTTCCACCTTCATTCTCTTTTTCCTGGTCGTACCC
ACATCCGCTACATATCTCACACCTCCTTTCCCTTATCTCTAACATCATCT
TTATAAATATCTTCCAATACACACTAGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_f11.g1 MSMg01no076_f11.g1 CHROMAT_FILE:
MSMg01no076_f11.g1 PHD_FILE: MSMg01no076_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:17 2005
         (149 letters)



>mm_chr13_110593285_110593832
          Length = 548

 Score =  273 bits (141), Expect = 4e-78
 Identities = 147/149 (98%), Gaps = 1/149 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaggggtaaggaagattaggggaggggagtaaaagcttggaggcagcaaacccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaggggtaaggaagattaggggaggggagtaaaagcttggaggcagcaaacccagg 260

                                                                       
Query: 61  catcatcctataccttctccaacttagtcacccaaagcactggtggaaaaccactggacc 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 catcatcctataccttctccaacttagtcacccaaagcactgg-ggaaaaccactggacc 319

                                        
Query: 121 tgcttgagtctcacttcgacgactgtgaa 149
           ||||||||||||||||||| |||||||||
Sbjct: 320 tgcttgagtctcacttcgatgactgtgaa 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 548
Length adjustment: 8
Effective length of query: 141
Effective length of database: 540
Effective search space:    76140
Effective search space used:    76140
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)