BAC Information

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BAC

Clone NameMSMg01-076I21
Chromosome13 (Build37)
Map Location 21,006,575 - 21,006,846
singlet/doubletsinglet
Overlap geneAoah
Upstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076I21.T7 (MSMg01no076_i21.b1)MSMg01-076I21.TJ (MSMg01no076_i21.g1)
ACCAG299104AG299105
length793781
length of high quality
(start - end)
274 (107 - 380)---
definitionCHROMAT_FILE: MSMg01no076_i21.b1 PHD_FILE: MSMg01no076_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:34 2005CHROMAT_FILE: MSMg01no076_i21.g1 PHD_FILE: MSMg01no076_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATAAAATATTAATCTTTATTCTTTTCTAAATATTTCTACTAACTCCTCTA
TTACCACAACCAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCCATCTTTCGCATAATACCCTTTAAAAGAGAGATG
AAGAGATTAGCAGTGTGATTTTAAATGTATGAGACACATACTCTAAATCC
TTCCCAACTGAATTTAACATGCAAAGGCAAATCAATATATGAAACCCGTT
CAAGCCTTTTGGGCCCCTAATCCAGCATAGCAATACTTCATGGTATGAGT
TGGGTTTAAGAGTAATTGGTGATAGTACAGAAAGATAACAGATGAGACCC
AGTGCTTCAGAGCAACCTGGGCCAACCATTTATAAGAAGAGCTGGTCAGC
GTGACTCTTCTTGGAGCCCTGAAGACTGATTGAGTCTTGAGGACTTAGTC
AGGAGAGTGTATCTACAGTTCTAAGCTGGAGATAATAGTGTCCAGATACC
TCAGGAACACCAATTTTCATCATTTCACCCTTTCGCCCCTCACTTATCCC
AGTTAATATTGATGAATAGTATAGATGATTGTGGTAGTCACAATGCAACG
ATTTACTCTTGATTACTTGATAAAACACAACATATGATGCTGAATAACAC
CCCTAATATTAATAATATTACCTGATTAACCCCCCTGTATGAACAATCCA
GATGAATATTAAATTACAAAAGCTCATCTTGTCCCTCACCGTCTTCTACC
CCCCCCCGGCCCATCCTCCCCCACCTTCCGCGCCCCGCCGCCA
NNNNNNNNNNNNNNNNNCCCCCCCCNNCCCCCCCCTNNNCCCCNCTCTTC
TTNTTCCGATGATAGGGGAGGCCTGGNGGACGCCGGGTCGGCGACCGCAG
GNGAANNANAGAAGTTCCCAGACGGGCGGGANCNNNNNNNNNNNNNNNNN
NNGGAANNAGCCNCCGGCCGACGCACCGGGGAGAAAGAACCNAACCCAAA
CAGAAGGCCGCCAAAAAGGCCAAGAGACAGGGGCCACAGCCACACAGAAC
CCGGCCAGCGACAGGAGGGACCAACGACCAACGGGCGCCAGGAGAGCCAG
AGCCGGTGTCTCCCAGGACAAAGGAACAAGAAAAAAGGAGAGGACACCGA
ACCACAAGGAACCGCAACGATTTTTTTTTTTGGACGCAAAAAAGGAAGCC
ACCAAAAACCAGTTATGCCCCCCCCGCACCCAAGACAAAAAAGGGCGGCC
CGGCNAGACCAAANNAACAACAAAAAGCAGGCCCACCCCAGCGACCCCAA
AGCAAACCAACACCGAGGGGCGGGCAAGAACGAAGAACAGCCCGCGCCAG
GCGACACGCAGAAAGCCCCACAGAACAGCAGCCAGCACAACCAAGGGAAA
AGGCCCCCGCGACCACCGGCGGAAAGAAGAGCCACCCCAGGCAAAAAACA
CAAGCCCGCAAGCAAGGGGGACAAGCACCACAGACCGCCACGCCCCCCCG
GGGAAAGACCCGCAATTTTTCTTTTCCAAAAGATGGAGCAACTCACAACA
CACAACATAGAAAACACAACTAGCAATCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_i21.b1 MSMg01no076_i21.b1 CHROMAT_FILE:
MSMg01no076_i21.b1 PHD_FILE: MSMg01no076_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:34 2005
         (274 letters)



>mm_chr13_21006372_21007046
          Length = 675

 Score =  480 bits (248), Expect = e-140
 Identities = 266/272 (97%), Gaps = 1/272 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatctttcgcat-aataccctttaaaagagagatgaagagattagcagtgtga 62
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaattccatctttcggatcaataccctttaaaagagagatgaagagattagcagtgtga 416

                                                                       
Query: 63  ttttaaatgtatgagacacatactctaaatccttcccaactgaatttaacatgcaaaggc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttttaaatgtatgagacacatactctaaatccttcccaactgaatttaacatgcaaaggc 356

                                                                       
Query: 123 aaatcaatatatgaaacccgttcaagccttttgggcccctaatccagcatagcaatactt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 aaatcaatatatgaaacccgttcaagccttttgggcccctaatccagcatagcaatactt 296

                                                                       
Query: 183 catggtatgagttgggtttaagagtaattggtgatagtacagaaagataacagatgagac 242
           ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 295 catggaatgagttgggtttaagaggaattggggatagtacagaaagataacagatgagac 236

                                           
Query: 243 ccagtgcttcagagcaacctgggccaaccatt 274
           ||||||||||||||||| ||||||||||||||
Sbjct: 235 ccagtgcttcagagcaatctgggccaaccatt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 675
Length adjustment: 9
Effective length of query: 265
Effective length of database: 666
Effective search space:   176490
Effective search space used:   176490
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)