BAC Information

Click to search

BAC

Clone NameMSMg01-076M01
Chromosome13 (Build37)
Map Location 110,438,290 - 110,438,403
singlet/doubletsinglet
Overlap genePde4d
Upstream geneEG668144, LOC621663, LOC100040968
Downstream geneLOC100040577, Rab3c, EG432803, 9830130M13Rik, Plk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076M01.T7 (MSMg01no076_m01.b1)MSMg01-076M01.TJ (MSMg01no076_m01.g1)
ACCAG299254AG299255
length952833
length of high quality
(start - end)
46 (137 - 182)114 (137 - 250)
definitionCHROMAT_FILE: MSMg01no076_m01.b1 PHD_FILE: MSMg01no076_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:50 2005CHROMAT_FILE: MSMg01no076_m01.g1 PHD_FILE: MSMg01no076_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCATCCTATCTTATTATTTTTCACCCATACGTAACTAACACAAACAAA
CACTTCTCCCCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TCCTAGAGGATCCGCNGGAATTCCAGGCACAGCCCCACTGCCTAGGGACA
AATAGAGCGTTGTAAAGCGTTCCGACCAACACTAGGACTGGCGGTTTACG
GAAAATTCTCATAGTTTCGAAAAGATAGTCTCTTACGGTTCTGCCTGTTC
GGCTTCCTAGAGGCTGGTATCCCTGTTGATACACTTAGTGTTGTTATGAA
ACTGTGCTTAGTTAAACACTGTTATTTTTACTCTTCTATCGTGTAGTCTC
TCTTCACAACAAAAATTATTATTATTTTGTATATCTTATATGTGATTACT
CACTATGATAGTATTCTTGTCCTACAGTTGCATTTATCATAATCATCTGT
TTCTATTGTTTATTAGATTAAATAATAATGTTATATATTGTTAATATTTA
ATTTTTTAATTTCATTGTTGTATTTTCGTTGCTATTTTTTGGTCATATGT
TCTTTTTAAACTTATTTAATTTTATTTCCTTCCTTTCTTTCTTCACACTA
CCCCTCTCTTTTCTTCCTCCTCTTTGTCCTTGTCTTGTTGTATATTTTTT
TTCTTCTATATTGTAACTTATTCCCTATTAATCTTCTCATCACTCTCTCT
CCCCTCTTTTTATATCTTTTTTCTTTTCTCTAACTCTTTTAATGCATACT
TCTGTCTCTTTCATCCACTTACATTTTTATTTCTATTCTTTATTCTCTTT
CTTCTTTTCCTCTTTATTTCTCTTTTATATTATCTTTCCTCCATTTATAT
CTAACTCTTCTATCTCCCTTCCATAACTTTACCTTACTTCTCCCTTCTCC
CTNACTAACCCCTCCATCCCTCACCCCACCCCCCCCTTTCCCCCATACTC
CT
TTTTTTNTTNTTNCTCCTTCCCCCCCTCTTTTCTTCCCCCCCCCTCACTC
TTCTCTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACAAAACAAACAA
CTCAGAACGTAAGGCTTTTAGGGCGTTTATTAAATGTCTTGAGTATGCAT
TTTTAGCCGTCTGTGTACCCAGACACTTAATATTGAGTATAATTTGAGAC
GATAGCTGCATAGCCTGCCCTTTAATATGGTCAGTTCGTGATAGTTACCA
TTATTCAAAACGATAGGCTATAATATCTGTGTGTATGTATGCACCTGCGT
AAGCGCGCACGTAGCGCAAGTGCCCGTGTACATGTGCCCACATGTTTATG
CACAACCAAATAATACATTAATCACAATAATTCAATGTGATAACTGCTCT
TATTATGTATTAGAAAATCCTAATATCAACTTAAAAAATTTATACTCCAT
TAGCTTTTCATCTTGCCACCTAATTTTAGATTAACCCCTATTGCAACACG
TCTGCCTTACTGTTCTGCTCTCCCCGCCTAGCCCTCTTACTCCTCCTTCA
CATGCCCTCGCCCCTAGTGTCCACGCCTCTCTACCCTCTCTCTCTCCCCT
CCTCGCTCAATATCTCCTTTGCCTTCTCCTCTGCCTTCCTCTTTCTCTCT
TCCCCCTCTCTCTCCCAGACTCCCCCCCCCCAACCTTACCCCTTTCTGTC
CCTTTGGGATCCACTACGTCCCCAGTATTACATCTTTATAATATATACAC
TCACAAATTCCACCCATATACATCATGTCATAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_m01.g1 MSMg01no076_m01.g1 CHROMAT_FILE:
MSMg01no076_m01.g1 PHD_FILE: MSMg01no076_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:50 2005
         (114 letters)



>mm_chr13_110438090_110438603
          Length = 514

 Score =  213 bits (110), Expect = 3e-60
 Identities = 113/114 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaaaacaaacaactcagaacgtaaggcttttagggcgtttattaaatgtcttgagtat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aacaaaacaaacaactcagaacgtaaggctttttgggcgtttattaaatgtcttgagtat 260

                                                                 
Query: 61  gcatttttagccgtctgtgtacccagacacttaatattgagtataatttgagac 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatttttagccgtctgtgtacccagacacttaatattgagtataatttgagac 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)