BAC Information

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BAC

Clone NameMSMg01-076M19
Chromosome13 (Build37)
Map Location 86,090,639 - 86,090,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1, LOC435373, LOC675662
Downstream geneCox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076M19.T7 (MSMg01no076_m19.b1)MSMg01-076M19.TJ (MSMg01no076_m19.g1)
ACCAG299290AG299291
length799797
length of high quality
(start - end)
39 (141 - 179)339 (134 - 472)
definitionCHROMAT_FILE: MSMg01no076_m19.b1 PHD_FILE: MSMg01no076_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:54 2005CHROMAT_FILE: MSMg01no076_m19.g1 PHD_FILE: MSMg01no076_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAATTATTATATAAACAACAATAACCCAGCACCTTCTTNCACCCCTTGTT
CTTATTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCAACTGACCATACCAAAGGGCTGAGAAGCACTTGA
AAAAATGTTCATCATCCCTAATCATCAGGGAAATCGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GAGACAGTAGATGCTGGTGTGTATGTGGAGAAAGAGGAACACTCCTTCAT
TGCTGGTGGTATTGCTAGCTTGTACAACCACTCTGGCGATTCCTCATAAT
ATTGGACATAGTACTACTGGAAGATCCAGCTCTACCTCTCCTGTGCATAT
ACCCAGAACATGTTCCAACTGTTAATAATGACAAGTGCTCCACTATGTTC
ATAGCAAACTTATTTATAATATTGAATGTAGTATTTCTTAATATTGTCTC
TATTAAACAGAAATAGAACATTTTTTGATAATGCTATTCCCTACCTAATA
ATAAAATGTCTTTTTAACTTTATGAGAACTATGTTTATTCTGATATTTAT
TGCATTTTTGATTGATTTATATATTGCCTCTGACACTTTATCCCAGTAAT
TAGGCTCACTTATATATACAACCAACAGCTATGTACCTTTTATTCCTATT
AATATTCCTCCATTTTGCTTCCAACACTGTCACGATTATTCCTGCTTACC
CTTTTTTTTCTTTTTTCTTTCTGTCTACCGTCTCCCATGAGAATTTTCC
NNNNNNNNCCCCNNNCCCCNCCCCCCCCCCCNNCNCCCNNNCCCCCTTTC
TCCCTTCCCCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATATGACTATGCAAGT
TCAGGTTTACCGTCTCTTTTGCAAGACATATGGCAGCTTTCATTAAGACA
TGCTTAGAATTCAATTTGGGCTTCAACTTCACAAGGCCATTAATTCACAA
TTGTGTGGGTTACACGTGCTTTCTGTTCTGGAACACTTGTTCTTTGACCC
TGAGATGAACTTTATGTGTATGTTATATGGTAATATATTAATAAAACAAG
AAAATGCATGGAGAGACCCTATTAAATATATTTGAAGGGCACAGGGAATA
ATAAATTACTGCAACCCTCATTATTAATGAATAAATACTTTCAATAATGC
ATCTGTGTTAATATTTATTCTAGTACCCAACAGATACACTCACACACACA
TGCAGTTTTTAAGGAAACTCTTGACTAAGTGTAATTTTCTTGGAAATAAG
TGCTTCTATATAAGGACAAAGATACTTTACACCAGAGCTTTCCCTACTAT
GAAATAAACTTCCACTATGTCACACCCATTCACTTTTTCTTACCTGACTG
ACCTTCCCTGCTTCATCTTTATTGCACAATTACCCTCAAATGTTCTTCAC
AGATTATTCCAATTTTCTACTATTTAAAGCTTTAGACTTACCTTTTCCTT
AAATCTTGTTTATTTTACCTCCTTTAATTCCACATAAGCTCACATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_m19.g1 MSMg01no076_m19.g1 CHROMAT_FILE:
MSMg01no076_m19.g1 PHD_FILE: MSMg01no076_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:54 2005
         (339 letters)



>mm_chr13_86090439_86091177
          Length = 739

 Score =  632 bits (327), Expect = 0.0
 Identities = 336/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatgactatgcaagttcaggtttaccgtctcttttgcaagacatatggcagctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tatatgactatgcaagttcaggtttaccgtctcttttgcaagacatatggcagctttcat 480

                                                                       
Query: 61  taagacatgcttagaattcaatttgggcttcaacttcacaaggccattaattcacaattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 taagacatgcttagaattcaatttgggcttcaacttcacaaggccattaattcacaattg 420

                                                                       
Query: 121 tgtgggttacacgtgctttctgttctggaacacttgttctttgaccctgagatgaacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtgggttacacgtgctttctgttctggaacacttgttctttgaccctgagatgaacttt 360

                                                                       
Query: 181 atgtgtatgttatatggtaatatattaataaaacaagaaaatgcatggagagaccctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgtgtatgttatatggtaatatattaataaaacaagaaaatgcatggagagaccctatt 300

                                                                       
Query: 241 aaatatatttgaagggcacagggaataataaattactgcaaccctcattattaatgaata 300
           |||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||
Sbjct: 299 aaatatatttgaagggcacaggaaagaataaactactgcaaccctcattattaatgaata 240

                                                  
Query: 301 aatactttcaataatgcatctgtgttaatatttattcta 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aatactttcaataatgcatctgtgttaatatttattcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)