Query= MSMg01no079_b02.b1 MSMg01no079_b02.b1 CHROMAT_FILE:
MSMg01no079_b02.b1 PHD_FILE: MSMg01no079_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:35 2005
(564 letters)
>mm_chr13_110587814_110588775
Length = 962
Score = 1035 bits (535), Expect = 0.0
Identities = 554/561 (98%), Gaps = 2/561 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaggcacaggcaactgcctagggacaaatagaggttgtaaagcgtttgaccaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaattccaggcacaggcaactgcctagggacaaatagaggttgtaaagcgtttgaccaa 682
Query: 64 cactggactggggtttaggaaaatttcagagtttgaaaagatagtccttacggtctgcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cactggactggggtttaggaaaatttcagagtttgaaaagatagtccttacggtctgcct 622
Query: 124 gttggttcctagggctggttccctgtggtcacacaggttggttgaaacgtgggagtaaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttggttcctagggctggttccctgtggtcacacaggttggttgaaacgtgggagtaaac 562
Query: 184 actggctttcaccttccaccggagtctttaaaaaaaaaaaattaacagatttggaactaa 243
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 561 actggctttcaccttccaccggagtcttt--aaaaaaaaaattaatagatttggaactaa 504
Query: 244 gagtgactacaacttggagtagcttggcgaagttgtagtatcatatcgctggcctttgca 303
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 503 gagtgactacaacttggagtagcttggcgaagttgtagtatcatattgctagcctttgca 444
Query: 304 agtgagaaatagatgcacaatggagatttaagtttaaatcagtgtgtattcagtgctatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agtgagaaatagatgcacaatggagatttaagtttaaatcagtgtgtattcagtgctatc 384
Query: 364 tgggcaaagccttcagactaagacaatacacacacaagcacacacatacacacatatttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgggcaaagccttcagactaagacaatacacacacaagcacacacatacacacatatttc 324
Query: 424 atacatatgtgtgtatgtgtaatgcaacatgcttctggaattttctcagaatctccatta 483
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 323 atacatatgtgtgtatgtgtaatgcaacatgcttctggagtttgctcagaatctccatta 264
Query: 484 tgctatgcataagtatgtgtttttccaagagatttctggaacttggcaatactgagggtt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgctatgcataagtatgtgtttttccaagagatttctggaacttggcaatactgagggtt 204
Query: 544 tttggtttggtttggtttggt 564
|||||||||||||||||||||
Sbjct: 203 tttggtttggtttggtttggt 183
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 962
Length adjustment: 10
Effective length of query: 554
Effective length of database: 952
Effective search space: 527408
Effective search space used: 527408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_b02.g1 MSMg01no079_b02.g1 CHROMAT_FILE:
MSMg01no079_b02.g1 PHD_FILE: MSMg01no079_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:35 2005
(283 letters)
>mm_chr13_110438084_110438767
Length = 684
Score = 462 bits (239), Expect = e-135
Identities = 272/283 (96%), Gaps = 1/283 (0%)
Strand = Plus / Plus
Query: 2 cctcaaacaaa-caaacaactcagaacgtaaggcttttagggcgtttattaaatgtcttg 60
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 202 cctcaaacaaaacaaacaactcagaacgtaaggctttttgggcgtttattaaatgtcttg 261
Query: 61 agtatgcatttttagccgtctgtgtacccagacacttaatattgagtataatttgagacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtatgcatttttagccgtctgtgtacccagacacttaatattgagtataatttgagacg 321
Query: 121 atagctgcatagcctgccctttaatatggtcagttcgtgatagttagcattattcaaaag 180
| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 322 aaagctgcatagcctgccctttaatatggtcagttcatgatagttatcattattcaaaag 381
Query: 181 aataggctataatatctgtgtgtatgtatgcacctgtgtagcgtgtatgtgtggatgtgg 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aataagctataatatctgtgtgtatgtatgcacctgtgtagcgtgtatgtgtggatgtgg 441
Query: 241 gtgtgtaggtgtgcacacatgcatatgtaagccaaagacctac 283
|||||||| |||||||||||||| ||| | ||||||| |||||
Sbjct: 442 gtgtgtagatgtgcacacatgcacatggaggccaaaggcctac 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
