BAC Information

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BAC

Clone NameMSMg01-079L01
Chromosome13 (Build37)
Map Location 93,917,431 - 93,917,678
singlet/doubletsinglet
Overlap genePapd4
Upstream geneMsh3, Dhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444
Downstream geneLOC100039163, Homer1, Jmy, EG619883, Bhmt, Bhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079L01.T7 (MSMg01no079_l01.b1)MSMg01-079L01.TJ (MSMg01no079_l01.g1)
ACCAG300711AG300712
length705696
length of high quality
(start - end)
662 (44 - 705)248 (68 - 315)
definitionCHROMAT_FILE: MSMg01no079_l01.b1 PHD_FILE: MSMg01no079_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:23 2005CHROMAT_FILE: MSMg01no079_l01.g1 PHD_FILE: MSMg01no079_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAATCTGCGTTGCCAGGATAGAAGCAGATCAGTTCACATGAACCAGCA
GCAGCTCCATCCACTCACAAACACCATTCACCAATCAGCAACGGCTGTTC
CATCCAGAAGAAACCAGGAGGCTCTGCCAATCAACCCAAGCCTGCAGAAG
CATCAAGAAGCCGAGGGAATATTACAAGAAGTTCTTTGGTGTGTTTCCTT
CTATGAAGTCACAGCATTGTCAACGAAGACCAACATCCGCAAAGCCCAAT
GAAGACCATCAAAGAGTGCCTAGGTGAACCAATATTAGGACACCAAATGA
AATTTATATCCTTTCCAAACATCACACGTCCTCTCAAGTGTCCTCTCCAG
CAAAACACCCCATCCCCTTTTCCCAGGGAGCTTCCAGAAAAACACCCACA
TGTCTGTTCTCAGCAAAACATCCTCTCTCAGGTCTGCTTCAGCAAAAACA
ACTCTCATAAGATAGTTTCCAGAAAGACATCTCATGACACATCTGACTCT
CCAAAGAAACCAGAAATTTCCACTTCACAGGTCCAATTCTCAGCACCTAC
CTGGTGGCTCTCAACTCCAGTTCTAGGGATCTAATGCCCATTTCGGCCTC
AGCTGGCAACAGGCACACACGTACATGAAGACAAAATACTCATACATAAA
TGATA
ATGCAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGCTAAAATACGTCTTTTGTTCTGTGTTTAGTTTGTATTCTAAG
ATTGATTTTCCCCCCCCTTTCCTAGTCATGGCAGAGATTGAAAAACAAGA
GAGATCTGAACAGTGTGCTGCCTTTGAGAGCTGCTACCCTGAAAAGATAA
CTGGTCTCTAATTCTTCAATTCTTCCAAGAAATAAAGAACAACAGATCTA
TCATAATTCATTTTGTTTACCTCCATCATGGTTTATTTTTAATGTTCTTG
TTTTCATGTTTTATTTTTTAATTGACATATATAAAGATTGCATATTTTAT
TATGACATTTCCTAATAAACTCTTTGATTTAAGAAAATGTATTTTTGAAA
ATGTTTACATCTCTTAGTAGTATTATGGCGTGACTTTTCAGCATAAAATA
TATTTTGAGAAATTACCTGAACTAATAAGGTTTTGATATATTCTCAAGTA
CTTGTACCACATACTTATCCTGAAGAACTACGTGGGATTTTGCAAAGATC
CTAGTACTTAGTGTAACTGGCAGCAGCAGCAGCAGTCTAGCTCAGTTCTA
GCCAAGGAAAGATTCAAGTCAGCTATTCAGTTACTTGAAGCAAATGAAAT
CTTTGATTCAGTGTGATCACTGTGGCGTCTTGAAATACTGGAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_l01.g1 MSMg01no079_l01.g1 CHROMAT_FILE:
MSMg01no079_l01.g1 PHD_FILE: MSMg01no079_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:23 2005
         (248 letters)



>mm_chr13_93917231_93917878
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcttttgttctgtgtttagtttgtattctaagattgattttcccccccctttcctagtc 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 448 gtcttttgttctgtgtttagtttgtattctaagattgattttttcccccctttcctagtc 389

                                                                       
Query: 61  atggcagagattgaaaaacaagagagatctgaacagtgtgctgcctttgagagctgctac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atggcagagattgaaaaacaagagagatctgaacagtgtgctgcctttgagagctgctac 329

                                                                       
Query: 121 cctgaaaagataactggtctctaattcttcaattcttccaagaaataaagaacaacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cctgaaaagataactggtctctaattcttcaattcttccaagaaataaagaacaacagat 269

                                                                       
Query: 181 ctatcataattcattttgtttacctccatcatggtttatttttaatgttcttgttttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctatcataattcattttgtttacctccatcatggtttatttttaatgttcttgttttcat 209

                   
Query: 241 gttttatt 248
           ||||||||
Sbjct: 208 gttttatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)