BAC Information

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BAC

Clone NameMSMg01-081G08
Chromosome13 (Build37)
Map Location 29,380,972 - 29,381,280
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneCdkal1, E2f3, Mboat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081G08.T7 (MSMg01no081_g08.b1)MSMg01-081G08.TJ (MSMg01no081_g08.g1)
ACCAG302008AG302009
length703683
length of high quality
(start - end)
295 (67 - 361)321 (65 - 385)
definitionCHROMAT_FILE: MSMg01no081_g08.b1 PHD_FILE: MSMg01no081_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:35 2005CHROMAT_FILE: MSMg01no081_g08.g1 PHD_FILE: MSMg01no081_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAATCTCGAAATTCAAATGCCTAAGAATCACTTAGAAAAATATTCAG
CACCCTTAGTCATCAGTAAAATGCAAGTCAAACAAAACTACTTTGAGACT
TCATTTACATCCATCAGAATTGCTAAGATCAATAAAACAGAAAAGACCTC
ATGCTGGCGAAGATGTAGAGTAAGGTGAGCACTCACTCCTTGCTGGTTAG
CACACATAGCTGTATTTATATAGCCACTATGGAAGTCAGGGTGTCAGTTC
ATCACAAAGATGGGAATCGATCTACCCCAAGATTCGGTTCTATAGTTTTT
GAGCATGTACTCCCAGGAGTCTTCATTCTATTACAGAGACTCTTGCTCAA
CCATGTTCATTGCTGCTCTCTATTCATAATGGTCAGAATTGGGAAAATAA
AAAAACAAAACTAGATGCCTTTCATTGTATGAATGGATAAAGAAATGTGA
TACATTTATACAATGAAATAGTACTTGCCTTTATCAGAATGAAACCGCGA
AATTTGCCTGCAAATATACAGAACCGCCACAAATACAAAAACTTCCCGAT
TGAGGTAACTCCGACCCCTCGAAGACCAATTATGCCGCACCTTTTTTTCC
ACGTGGTCGTCTGCCCTCTATGCCTTTGATAATCTCCCCACCACTCTTAT
TTT
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCCGCGCAATTCCCTCTGTAGACCAGGATGGCCTCGAACTCAG
AAATCTGCCTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCA
CCGCTACCCATCTTGGATGTCTTGTTTTGTTTCAGATAAGGTTTTGTTGC
AGAGCTCACACTGACCTGAATCTCTTCATCCCCCTGCCTTAAGAGCCTGA
TATCACAGGTGTTCACCACCATGCCCCTATGAGTTAATGTTTATGTTTGT
GTTCATACTGCCTTGATAGCTCTGGATGGCTGATCATACGCTGCGTTCAC
AACCCAATGGCTTTCAACCAAAAAAGAAGCTAGAAGAAAATGGATATTAT
GTTTTCCACTTATTTATAATTAATGACACTGAATAATTTAATATTATTGC
TTTGCTGTGTTTGAGTAAGATCACTTTACCTATGACAAAACATATTTTAA
TATCATAATATAACCCTTACTTGTTATTGTTTGAAAAACTTTTCCAGGGC
CCGGTCATGGTGACTGCTTGCCTTTAGACTCTGCGCTCAGGAAGTCTACC
CTTCAAGATTTTGTGAGCTCAATGTTCACCTTGATCATGTATTTCTTTCC
GGACCGAACGAATTTATTCGTACAAGCCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_g08.g1 MSMg01no081_g08.g1 CHROMAT_FILE:
MSMg01no081_g08.g1 PHD_FILE: MSMg01no081_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:35 2005
         (321 letters)



>mm_chr13_29380560_29381280
          Length = 721

 Score =  513 bits (265), Expect = e-150
 Identities = 298/309 (96%)
 Strand = Plus / Minus

                                                                       
Query: 13  agaccaggatggcctcgaactcagaaatctgcctacctctgcctcccaagtgctgggatt 72
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 721 agaccaggatggcctcgaactcagaaatctgcctacctctgcctcccaagcgctgggatt 662

                                                                       
Query: 73  aaaggtgtgcaccaccgctacccatcttggatgtcttgttttgtttcagataaggttttg 132
           ||||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct: 661 aaaggcgtgcaccaccactgcccatcttggatgtcttgttttgtttcggataaggttttg 602

                                                                       
Query: 133 ttgcagagctcacactgacctgaatctcttcatccccctgccttaagagcctgatatcac 192
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 601 ttgcagagctcacactgacctgaatctcttcatccccctgcctcaagagcctgagatcac 542

                                                                       
Query: 193 aggtgttcaccaccatgcccctatgagttaatgtttatgtttgtgttcatactgccttga 252
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggtgttcaccgccatgcccctatgagttaatgtttatgtttgtgttcatactgccttga 482

                                                                       
Query: 253 tagctctggatggctgatcatacgctgcgttcacaacccaatggctttcaaccaaaaaag 312
           ||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||
Sbjct: 481 tagctctggatggctgatcgtacgctgcgttcacaacccaacggctttcaactaaaaaag 422

                    
Query: 313 aagctagaa 321
           |||||||||
Sbjct: 421 aagctagaa 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)