BAC Information

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BAC

Clone NameMSMg01-081O10
Chromosome13 (Build37)
Map Location 20,502,314 - 20,502,908
singlet/doubletsinglet
Overlap geneElmo1
Upstream geneEpdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081O10.T7 (MSMg01no081_o10.b1)MSMg01-081O10.TJ (MSMg01no081_o10.g1)
ACCAG302396AG302397
length707705
length of high quality
(start - end)
597 (39 - 635)574 (66 - 639)
definitionCHROMAT_FILE: MSMg01no081_o10.b1 PHD_FILE: MSMg01no081_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:15 2005CHROMAT_FILE: MSMg01no081_o10.g1 PHD_FILE: MSMg01no081_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
AAATACCTGTGCTCAGAATTATTTATCTCATTGTGGACTGATGCATGAAA
AGATGCCCTGGCTCTGTGCCCCTGTCAAAGAATTCACTTAGAAGAAATAG
TGACTGTACTAGCTTTTTAATCGCTGCATAGCTTCCCTCCTGGGTACACA
GGCCTTGTAAAGAATTGGTTAGAAATCTATAGTCAATAAAAAAGCTTGTG
CTTTTAAATCATTTTTACTTTACGAGCAGAAATCTTTCCACAAATTTTGC
TAGAAGTAAAATCTTCATGAAAAAAATCAAAGAAAACAAGGCTACAGTAA
ATTGCTTTAGTTTTTTTCCTGGGTAGGATTATGTTTTACATTTTTATTGT
TTCTCCCAAGCATGAATGTTTACCAAATATTTTATGGTTAATTGGTTCCT
ATCTAAGGTTAAGTTCAGTGTTAAATCGCGATGATTACAGAACTGAAACT
AGAACATGAGGGATATTCTTTCAGTTGAGGCTTGAGTACCTCAACTTTAC
AATACCAACTTTAGAAAGAGTAAAGTAGCCCACTTCCCATGTCCATTCAT
AGGTAGGTTGCATCATTCATTAAAAAAAATAAAATAATATGAGGGCCTGC
GCTGCCACTCACCGGGGTCCAAGCCTTCTTCTGGTACCATGCTTGCGAAG
GTAAGAT
GTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTGGCAGAAGTGAGCTAAGTAGAGCATGAATG
TTTATCAACCACAGCAAATATAAACTAAAATGGAATATATGCTGTAGACA
GACCTTTGCTATGTTGTGTGTTCTTTTTACCCTTCTCCACCCACTTTTCC
CACTCTTTCCATCCCCAAACATCAGATAGGAGAGAAAAAAAGGATAGAGG
GGAAAGGGGATTACTATATTGAGAAACTACTACTTCCTGCTGATTAGGGA
CATCGAGGTCCTTGGGGGCAAGTTTGATCTTTGCTGTGAAGATATCTTAT
TTCTTCTTGTTGTTTCTTGTTTGCACATGACTACTTACCAAACTGCAACC
AACACCAAGCAACCAACAACCCACCAACATCCCCTCAGGGCCCCAGCATT
TATCTACATGCTCAAAAGACCCCAGATTCCAAATGTTCTACACTTGCACA
AGCTATCTGTAGCTGGCAAAATCATGCCCCTGCTAGAGCATGAGGCAAAT
CATAGTCAGCTTCTGTAAGACAATCTGAAGCAGCCGCATATCCCACACCC
GGGATTAAAACAAAAATGTATTCTTATAAGATTTCTGTGTTTTTTATAGA
AATCAAAATTCTCACTACAGTATGCAGACAATGAATCATGGAGCAGCGTT
GGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_o10.b1 MSMg01no081_o10.b1 CHROMAT_FILE:
MSMg01no081_o10.b1 PHD_FILE: MSMg01no081_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:15 2005
         (597 letters)



>mm_chr13_20502111_20503108
          Length = 998

 Score = 1108 bits (573), Expect = 0.0
 Identities = 590/597 (98%), Gaps = 6/597 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgaaa--t-acctgtgctcagaattatttatctcattgtggactgatgcatgaa 61
           |||||||||||  | |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctgaaagatga--tgtgctcagaattatttatctcattgtggactgatgcatgaa 261

                                                                       
Query: 62  aagatgccctggctctgtgcccctgtcaaagaattcacttagaagaaatagtgactgtac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aagatgccctggctctgtgcccctgtcaaagaattcacttagaagaaatagtgactgtac 321

                                                                       
Query: 122 tagctttttaatcgctgcatagcttccctcctgggtacacaggccttgtaaagaattggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagctttttaatcgctgcatagcttccctcctgggtacacaggccttgtaaagaattggt 381

                                                                       
Query: 182 tagaaatctatagtcaataaaaaagcttgtgcttttaaatcatttttactttacgagcag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tagaaatctatagtcaataaaaaagcttgtgcttttaaatcatttttactttacgagcag 441

                                                                       
Query: 242 aaatctttccacaaattttgctagaagtaaaatcttcatgaaaaaaatcaaagaaaacaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatctttccacaaattttgctagaagtaaaatcttcatgaaaaaaatcaaagaaaacaa 501

                                                                       
Query: 302 ggctacagtaaattgctttagtttttttcctgggtaggattatgttttacatttttattg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ggctacagtaaattgctttagtttttttcctgggtaggattatgttttacatttttattg 561

                                                                       
Query: 362 tttctcccaagcatgaatgtttaccaaatattttatggttaattggttcctatctaaggt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttctcccaagcatgaatgtttaccaaatattttatggttaattggttcctatctaaggt 621

                                                                       
Query: 422 taagttcagtgttaaatcgcgatgattacag-aactgaaactagaacatgagggatattc 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 622 taagttcagtgttaaatcgcgatgattacaggaactgaaactagaacatgagggatattc 681

                                                                       
Query: 481 tttcagttgaggcttgagtacctcaactttacaataccaactttagaaagagtaaagtag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttcagttgaggcttgagtacctcaactttacaataccaactttagaaagagtaaagtag 741

                                                                    
Query: 541 cccacttcccatgtccattcataggtaggttgcatcattcattaaaaaaaataaaat 597
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cccacttcccgtgtccattcataggtaggttgcatcattcattaaaaaaaataaaat 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 998
Length adjustment: 10
Effective length of query: 587
Effective length of database: 988
Effective search space:   579956
Effective search space used:   579956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)