BAC Information

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BAC

Clone NameMSMg01-082C02
Chromosome13 (Build37)
Map Location 63,255,256 - 63,419,541
singlet/doubletdoublet
Overlap gene2010111I01Rik, Fancc
Upstream geneEG630579, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082C02.T7 (MSMg01no082_c02.b1)MSMg01-082C02.TJ (MSMg01no082_c02.g1)
ACCAG302571AG302572
length700696
length of high quality
(start - end)
218 (74 - 291)481 (72 - 552)
definitionCHROMAT_FILE: MSMg01no082_c02.b1 PHD_FILE: MSMg01no082_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:32 2005CHROMAT_FILE: MSMg01no082_c02.g1 PHD_FILE: MSMg01no082_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,419,324 - 63,419,541)(63,255,256 - 63,255,736)
sequence
CTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGAGAGACCGCGG
AATTCTCTGAACTTTTCCACAATATGGATGTGATGTTCTACACTGTATCT
GCCTCAGAAGCTCTGAGCTTCTGTGAAACACAGCAATGGGCCACTCTTGA
AACAAGCAGGAGTCTCAGCATGAAATAAATATTTTTTATGCAAAAACAAC
CCACGGACTTAGAACAACTACTGTTATTATGTGGATTCCATAGTCTTGTG
CCCTCTGTTTAAGCTGTGACTTGTAGGAACAACTGTCCCAGTGTTTACAA
CAAAACATACGAGCTTGTGTGTGCTCGGTCTGTGCTTCCCTCACATAGCC
CAGGCAGGGGCAGCCCTGCATTCTTATCAGCACCGTCCAGTGCGGCCTGG
GACTCTAATTGACTATGGCTCATGGTCAGGGGTCTTCAAGGGGCCGTTTG
CATTTTTCCCACAGTAAGAAACCTCTGACTACCTTCTGCTGAGGACTTGC
CTTCATTTCCTTCCATACAAAATAAGGCCAGGTGCTGGTACGATGCCCTG
TTCTCCTTGCTGCGCAATATGAAAGAACTGGTGGATATTTCTATTACCGT
TCATTCAGGTTTATATGGAGCTGTGTGTGAACTACCGTGTCGCCTACCCG
GCTGTTCTTCTCTCTGGAGCGCGAAAGCATCAAGTCCGTCCTATAGTCTN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAGAGGGGCTGTTACTTTGAGATTTAA
AATGGCAATCCTGCATAACTCTCATCTGGAAAAACAATACATTCAATGAC
TTATGGTTTAAGAAAGCAAAACAATAACAACAAAATCTTTGCTCTTAGTG
TGAAGATGTTAGCAATGTGATTATCTTCCTTGAGGTAGGTGATCCCTCTT
CCAGGGCATAAGAATTCCAGGGGTTTTGACAGAAGGGAAGCCTGAGCCGA
TTGCTTGGGTCTGAGAATACAGGATTGGACTGTGCACCTGTGAGTGGGCC
TTGCATACCAAACCAAGGTCATGGTAGCCTAGACATTCTAAAAGCTCTCT
GTTGTGGGGTGCTGTCTATGCTAAGGGACCTACTAGCAAAGGGACATTGA
CTGTTGATCCTCAAAGTGGACTGAGGTGTGTTGTTTTCTTTACTAGCTAC
TGAGGAAAACGATGCTTTAAAACGTCTATGTACCTTGAGTAAGTGATTCT
GACATTCAGAGTCAGAAAGAGGGAAGGAAAGTTGTCGTTATCCCTTATGT
CCCAAGTTTACTTAACACCCTTGAGGGTAGTCACTGAAAGCTTGAAAGCA
TGGTCGGATCCACCTGGACATTGCCTACCGGTACAGCTCTGATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_c02.b1 MSMg01no082_c02.b1 CHROMAT_FILE:
MSMg01no082_c02.b1 PHD_FILE: MSMg01no082_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:32 2005
         (218 letters)



>mm_chr13_63419124_63419741
          Length = 618

 Score =  391 bits (202), Expect = e-113
 Identities = 214/218 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggatgtgatgttctacactgtatctgcctcagaagctctgagcttctgtgaaacacag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 418 atggatgtgatgttctacactgtatctgcctcagaagctctgggcttctgtgaaacacag 359

                                                                       
Query: 61  caatgggccactcttgaaacaagcaggagtctcagcatgaaataaatattttttatgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caatgggccactcttgaaacaagcaggagtctcagcatgaaataaatattttttatgcaa 299

                                                                       
Query: 121 aaacaacccacggacttagaacaactactgttattatgtggattccatagtcttgtgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 298 aaacaacccacggacttagaacaactactgttattatgtggattccacagccttgtgccc 239

                                                 
Query: 181 tctgtttaagctgtgacttgtaggaacaactgtcccag 218
           |||| |||||||||||||||||||||||||||||||||
Sbjct: 238 tctgcttaagctgtgacttgtaggaacaactgtcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 218
Length of database: 618
Length adjustment: 9
Effective length of query: 209
Effective length of database: 609
Effective search space:   127281
Effective search space used:   127281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no082_c02.g1 MSMg01no082_c02.g1 CHROMAT_FILE:
MSMg01no082_c02.g1 PHD_FILE: MSMg01no082_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:32 2005
         (481 letters)



>mm_chr13_63255056_63255936
          Length = 881

 Score =  930 bits (481), Expect = 0.0
 Identities = 481/481 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagaggggctgttactttgagatttaaaatggcaatcctgcataactctcatctggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagaggggctgttactttgagatttaaaatggcaatcctgcataactctcatctggaa 260

                                                                       
Query: 61  aaacaatacattcaatgacttatggtttaagaaagcaaaacaataacaacaaaatctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacaatacattcaatgacttatggtttaagaaagcaaaacaataacaacaaaatctttg 320

                                                                       
Query: 121 ctcttagtgtgaagatgttagcaatgtgattatcttccttgaggtaggtgatccctcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcttagtgtgaagatgttagcaatgtgattatcttccttgaggtaggtgatccctcttc 380

                                                                       
Query: 181 cagggcataagaattccaggggttttgacagaagggaagcctgagccgattgcttgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggcataagaattccaggggttttgacagaagggaagcctgagccgattgcttgggtc 440

                                                                       
Query: 241 tgagaatacaggattggactgtgcacctgtgagtgggccttgcataccaaaccaaggtca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagaatacaggattggactgtgcacctgtgagtgggccttgcataccaaaccaaggtca 500

                                                                       
Query: 301 tggtagcctagacattctaaaagctctctgttgtggggtgctgtctatgctaagggacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggtagcctagacattctaaaagctctctgttgtggggtgctgtctatgctaagggacct 560

                                                                       
Query: 361 actagcaaagggacattgactgttgatcctcaaagtggactgaggtgtgttgttttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actagcaaagggacattgactgttgatcctcaaagtggactgaggtgtgttgttttcttt 620

                                                                       
Query: 421 actagctactgaggaaaacgatgctttaaaacgtctatgtaccttgagtaagtgattctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actagctactgaggaaaacgatgctttaaaacgtctatgtaccttgagtaagtgattctg 680

            
Query: 481 a 481
           |
Sbjct: 681 a 681


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)