BAC Information

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BAC

Clone NameMSMg01-082K09
Chromosome13 (Build37)
Map Location 31,648,326 - 31,648,616
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp22, LOC666443, Irf4, Exoc2, Hus1b, EG432743, LOC100041257, LOC100041266, G630018N14Rik, LOC100042491
Downstream geneFoxq1, LOC100041312, Foxf2, Foxc1, 4930548F15Rik, Gmds, LOC666212
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082K09.T7 (MSMg01no082_k09.b1)MSMg01-082K09.TJ (MSMg01no082_k09.g1)
ACCAG302967AG302968
length684682
length of high quality
(start - end)
95 (66 - 160)278 (72 - 349)
definitionCHROMAT_FILE: MSMg01no082_k09.b1 PHD_FILE: MSMg01no082_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:09 2005CHROMAT_FILE: MSMg01no082_k09.g1 PHD_FILE: MSMg01no082_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCACACAGGATCCGCGGAA
TTCTCTTTTCAAGCATCTTTCCCTCCACGTATGGCCCATGTGTTTTCATA
TGTCTCTACTGATGCTATTGCTTAGTAAGAAGAATACACAAAGCCTTAGT
TTTTCACACAAGTTGAATGGAAACAAATGCAACTTTGTAGGTCATGGGTC
ATACACATGCTTTCAGCCTGGGCCTTGAAGCACTGCCCGGAACAGAACCA
TCTGTCAGACTTTAACCATTTACCTTCCTCCTGGATTCTTGCAGAAGGAT
CCCCCTCACCTAGTGTATTGGCCTCGGAAAGGAAGCACAAGATAGCAGAG
GCTGATCCTGAATCCTAATAAATTTGTCCTATGGAGGGCCTGTGGCTTTT
AGGTTTTTGCCCTGAAAACATCCTCCTTGGAATTGTGCCACAGCATTTTG
CGTTGCCTTAAAAATCCAGAATCACACACGACCCCTTTTCTGCTCCCCTC
CTTTTATCCACCTGGTGAGTGATTTGCGCTTGCCTGATGCTCAACATTGG
ATAGCCTCTATTCTGGTCCTTCTGCTGCAGAAGCTCAACCTTTATTTCGC
TCCCCCCTCCTTAGTTGACCCTGTCCCTAGACCTCCCTGCCACCCCCGCA
CCTAAAATCCTACTGCGCCCTACATTCTTCCTCT
ATGCATGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCATCCTCCACTCCTCCCCCATCACAAG
CTCCAAACCCAACAGTCAGCTTAATAGGGACGAGGAATAGGCATTTCCTC
GCCTAACCAAGATCAAGGTAAGGAGAGTATCTGCTGCAGCTAGTGAGAGG
TGGTGACGGATGAAGTGCGGGACTGGCAGTGAGGTGGGCTATTCTACTTG
GCAGCCACTGGTGTTCCTAGGCCTGGAATCTCCCTATTGCCTATTGAGTC
TTAACCCTCCTAAATGTATCTCCTCCATAAAACAGGCACGCTGAGTTCAA
ATAAGGACAACCTTCATTAACAATGTCTTTTATCCCTGGCCAAATCAATG
CTTTGTCACCTTGCACTGGGCTAATTCTCATCCCAACGCACTCCCCTGGC
CAGGACCTAGGGACCATCCATTTGCGGGCAGGAGCTAATAGGAACCCCTT
GAAAGAAGCTGTTTTTCGAGGCTGGAGGAACGCACCTCGTGGTAAACAGT
TACTCCCTGCATACTACAAAATATCATATTCCCTCCTGGCTGTCAATATG
CCCACTGCATTCTGTATGTCTTTACGGCTTCTTGACTTAAGATAAAAAAA
TCTTGTGTTTGCTTTCCCCACAAATTGTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_k09.g1 MSMg01no082_k09.g1 CHROMAT_FILE:
MSMg01no082_k09.g1 PHD_FILE: MSMg01no082_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:10 2005
         (278 letters)



>mm_chr13_31648126_31648803
          Length = 678

 Score =  449 bits (232), Expect = e-130
 Identities = 272/292 (93%), Gaps = 15/292 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatcctccactcctcccccatcacaagctccaaacccaacagtcagcttaatagggac 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatcctcctctcctcccccatcacaagctccaaacccaacagtcagcttaatagggac 260

                                                                       
Query: 61  gaggaataggcatttcctcgcctaaccaagatcaaggtaaggagagtatctgctgcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggaataggcatttcctcgcctaaccaagatcaaggtaaggagagtatctgctgcagct 320

                                                                       
Query: 121 agtgagaggtggtgacggatgaagtgcgggactggcagtgaggtgggct---attc--t- 174
           |||||||||||||||||||||||||||||||||||||||||||||| ||   | |   | 
Sbjct: 321 agtgagaggtggtgacggatgaagtgcgggactggcagtgaggtggactggcagtgagtg 380

                                                                       
Query: 175 -acttggcagccactggtgttcctaggcctggaatctccctattgcctattg-------a 226
            | || ||||||||||||||||||||||||||||||||||||||||||||||       |
Sbjct: 381 ga-ttagcagccactggtgttcctaggcctggaatctccctattgcctattgcctattga 439

                                                               
Query: 227 gtcttaaccctcctaaatgtatctcctccataaaacaggcacgctgagttca 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gtcttaaccctcctaaatgtatctcctccataaaacaggcacgctgagttca 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)