BAC Information

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BAC

Clone NameMSMg01-082M07
Chromosome13 (Build37)
Map Location 107,989,855 - 107,990,066
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322
Downstream geneLOC100040350, LOC100040366, Apoo, AI197445, LOC100040820, Zswim6, 3021401N23Rik, 2810008M24Rik, Ndufa12l, Ercc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082M07.T7 (MSMg01no082_m07.b1)MSMg01-082M07.TJ (MSMg01no082_m07.g1)
ACCAG303059AG303060
length761689
length of high quality
(start - end)
47 (99 - 145)211 (64 - 274)
definitionCHROMAT_FILE: MSMg01no082_m07.b1 PHD_FILE: MSMg01no082_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:19 2005CHROMAT_FILE: MSMg01no082_m07.g1 PHD_FILE: MSMg01no082_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGACAGGACCCGCGGA
ATTCATTGATGCGATACATCTGATGGTAACTTGTTCAATAACAATACATA
GATGAAAATTACTATCATTGCTTAGTATAAAATGGAGTTGGATGAATTGT
GACANTGAACTCCAGTTATGGGTGCTAGCTACAAACACAACTCGGAGTCT
CTGATATCTTAGCCCTGCTCTGAGTGCAATTGCTTAAAACACTTCGAATT
CTTATTTGTATATTAGTTTNTGGAAATATGCACTCAATAGAGTCCAGAAT
AGCTGCAATATCAAGAAAAGCCAGATTAATTCTCCTTAAAATAATTACTG
CAGCACCCCTACAATTCGCGTGAGAATGTAATATCGCCATTGTCACTCGG
ACTTGACACAACGTAACACTATTACTCAGCCATCTCACACGCTGGATGAG
ATCTGCTAGTTTGCATACGAATCGACCAGCATGTCTCTCCTCCTTCTCAC
ACTATCGGCTCTCTGTGATCTCTCTCGACCACCCACACCAGTCCTTCTCT
AATTTTTTCCTCCCTTTCCCTCATGACGTCTTACCCCTCTACCAGCCCTT
TACTTGTCCATCTAACTCCATCTTTCCTACCTCTTTCTTTGACCTGATCT
TTACGATCACCCTTCAACAACTTCTCTATGAATACCTAGTTTCTCCTCCG
TATTGATACCAGCACCTCATTGCCTTGTCTCATCTCTTACCACCCAACAT
CCTTATCTCCC
TGAAGGGGGAGGCCTGGNGGCGCCTGTCAAAAACAGTAGGTGAACTATAG
AATTACCCGCGAAATTCCTTAAGATANCACAGGTAAAGAAATTCTGAAGA
CACTTCTTGGAGAATGGCTTCTTTTGCCTTCTACATGGTGGTAACATTGT
GTTTGTTATTGATGCTATTGTCCTTGTCTGGTGAATATGCCAACTCTCTT
CTTCATTTGACAATACAGATGTTGGCTTGCTTACCTTAAGGTTTCTATTG
CTGCATCAAAACACCATGACCAGAAAGTAAGTTGGGGAGAGAAGGGCTTA
TTTAGCTTTCACTTCCACATTGAAGTTTATCCCTGAAGGAAGTCAGGTAC
ATGTACTCACACCATGCTGCAACCTGTATTCATGAGGTGATGTGAAGGCT
GTGATGCCAGTTGCTTATTGCTTGTAATCACAGGATTTTCATTCTGCTTT
CTTATATAATGCATGACCATCATCCTCTTATGGCTCCTCCTCCAACAGTT
CTGCCTTCCCTCATTGATTACTATATTGATAAAATTGCCCTAGGCTTTAT
TCTCATGTCAAACATTTCTACATCTGAAACCTCCTTTCCTCTCTTGAAGA
CTCTATCTTGTGTACTATTTTATCTACATACCCTTCACTTAAATCTGTTC
TATATCTTTTATTCTTTTTAATAATTTTTTTATATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_m07.g1 MSMg01no082_m07.g1 CHROMAT_FILE:
MSMg01no082_m07.g1 PHD_FILE: MSMg01no082_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:19 2005
         (211 letters)



>mm_chr13_107989655_107990266
          Length = 612

 Score =  366 bits (189), Expect = e-106
 Identities = 206/212 (97%), Gaps = 1/212 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccttaagata-ncacaggtaaagaaattctgaagacacttcttggagaatggcttct 59
           |||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attccttaagatagtcacaggtaaagaaattctgaagactcttcttggagaatggcttct 260

                                                                       
Query: 60  tttgccttctacatggtggtaacattgtgtttgttattgatgctattgtccttgtctggt 119
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 tttgccttctacatggtggtaacattgtgtttgttagtgatgctattgtccttgtctggt 320

                                                                       
Query: 120 gaatatgccaactctcttcttcatttgacaatacagatgttggcttgcttaccttaaggt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatatgccaactctcttcttcatttgacaatacagatgttggcttgcttaccttaaggt 380

                                           
Query: 180 ttctattgctgcatcaaaacaccatgaccaga 211
           |||||||| |||| ||||||||||||||||||
Sbjct: 381 ttctattgttgcaacaaaacaccatgaccaga 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 612
Length adjustment: 9
Effective length of query: 202
Effective length of database: 603
Effective search space:   121806
Effective search space used:   121806
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)