BAC Information

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BAC

Clone NameMSMg01-082N01
Chromosome13 (Build37)
Map Location 13,444,698 - 13,445,189
singlet/doubletsinglet
Overlap genenone
Upstream geneEG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd, Ero1lb, LOC664862, EG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108
Downstream geneGpr137b, LOC664960, Nid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916, Hecw1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082N01.T7 (MSMg01no082_n01.b1)MSMg01-082N01.TJ (MSMg01no082_n01.g1)
ACCAG303094AG303095
length692692
length of high quality
(start - end)
562 (44 - 605)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no082_n01.b1 PHD_FILE: MSMg01no082_n01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:23 2005CHROMAT_FILE: MSMg01no082_n01.g1 PHD_FILE: MSMg01no082_n01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAATTCTCCCCAGTGTACCTGAAAATTTGGAGGCCCTGCTGTTGCT
GCCTCAAAAGATATCTATGCTGGTTCTGTTTGTGAGGTAATAAGGAATTC
AACACAAAAGAAAATAAAAGGATCAGGTTCTAACAAAGCATGCAAATACC
TTAATACTTGTTCCACTTCTTTCATAGAGCAAGCAAATTTGGGTGCAGCA
AGGGAGATAGGAGACACTTTCTTTCATACCTCTTCTTAATAAAATAAAGT
AGTTAGTATTCCTTATCAACGTGAAGTAATACAAAATGGGACCAGTCTTC
CTAGTCTTGCCACAGAAATTGGCAGCACATTACCCAGTGCACTGAATGTT
CAGGCATGAAATTTACAGGATATATTAAACTTGCCTCAAAGTTGAGAATG
AGCAATGTATTGCAGAGTCAGAATCTCTGAAAGGAGACTTTCAAAGACAA
AGTGTGAACTTGTAGAGGTAAAGCCAAAATGGCAATGCCTCTGCTAGTTG
GTGGGAAATACTCTATTTTGAGGGGAAATTTTTCTAGAGCTCTCTTTTTT
TATTGTATCCTGGCCTATTTTTATTATCAGAGTAATATCAATTCAGATAA
ATTAGTCTGTTAGTATTCCCTTTCTAGAATATTTTAAACATT
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGCTTACATTGTGAGATTGCTT
GTGACAAAACACTTGCTGTTTGTCTGTGTCTCATCACCTGCTGTAAAAAT
CTAGCACTCGACAGCAAGCCTGACTGGTGCCATAACAATGTGAAGAGGAA
GTATTTTCATTGGTGGCCTGTATATTCCTTTAGTGGCATCCATGTTAGAC
TAAAATGGCCCATGCTCAGTACCCCTCTTGTTTTGGATTATGTGGAGGAT
CAGCCAAACAAGATAATCAATTTTGAAACTTGCCAACTCAGATGTTGGCC
CCTGTATTTTGTGTATGAAATGCTGTGCTGTGTCTCTCGACCCTGCCTAG
GTGCCACCATGTGTAAGGAGGGACAACTGTGCTGGTCTTCCTCAGCACTG
CTTCTCAGCAGTTTGCAGCCTGAAGTTCCTGCAGGAGCCCTTAGTAGTCA
CCAAAAGGCTCAGACCAGATACACGCTGTGTACACCAAGATACTCCTTGG
TCCAAACCAAGTACATAAACCCATGTGTCCTTTATTTGAAATGACTTCTA
CAGGTGCAGCTTTGAGTTTTCTGAGCAGAATTCCAAATAATTTGCTGTTG
TAACCACTGTAGTCTGAACCATGAATTACCATACTTGTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_n01.g1 MSMg01no082_n01.g1 CHROMAT_FILE:
MSMg01no082_n01.g1 PHD_FILE: MSMg01no082_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:23 2005
         (478 letters)



>mm_chr13_13444513_13445389
          Length = 877

 Score =  868 bits (449), Expect = 0.0
 Identities = 475/493 (96%), Gaps = 16/493 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgcttacattgtgagattgcttgtgacaaaacacttgctgtttgtctgtgtctcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 actgcttacattgtgagattgcttgtgacaaaacacttgctgtttgtctgtgtctcatca 245

                                                                       
Query: 61  cctgctgtaaaaatctagcactcgacagcaagcctgactg---------------gtgcc 105
           ||||||||||||||||||||||||||||||||||||||||               |||||
Sbjct: 246 cctgctgtaaaaatctagcactcgacagcaagcctgactgaaacgattgtacctggtgcc 305

                                                                       
Query: 106 ataacaatgtgaagaggaagtattttcattggtggcctgtatattcctttagtggcatcc 165
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ataacaatgtgaagaggaagtattttcattggtggcctgtatattcctttagtggcatcc 365

                                                                       
Query: 166 atgttagactaaaatggcccatgctcagtacccctcttgttttggattatgtggaggatc 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 atgttagactaaaatggcccatgctcagtacccctcttgttttggattatgtggaggatc 425

                                                                       
Query: 226 agccaaacaagataatcaattttgaaacttgccaactcagatgttggcccctgtattttg 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 agccaaacaagataatcaattttgaaacttgccaactcagatgttggcccctgtattttg 485

                                                                       
Query: 286 tgtatgaaatgctgtgctgtgtctctcgaccctgcctaggtgccaccatgtgtaaggagg 345
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 486 tgtatgaaatgctgtgctgtgtctctcgacc-tgcctaggtgccaccatgtgtaaggagg 544

                                                                       
Query: 346 gacaactgtgctggtcttcctcagcactgcttctcagcagtttgcagcctgaagttcctg 405
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gacaactgtgctggtcttcctcagcactgcttctcagcagtttgcagcctgaagttcctg 604

                                                                       
Query: 406 caggagcccttagtagtcaccaaaaggctcagaccagatacacgctgtgtacaccaagat 465
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 605 caggagcccctagtagtcaccaaaaggctcagaccagatacacgctgtgtacaccaagaa 664

                        
Query: 466 actccttggtcca 478
           |||||||||||||
Sbjct: 665 actccttggtcca 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 877
Length adjustment: 10
Effective length of query: 468
Effective length of database: 867
Effective search space:   405756
Effective search space used:   405756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)