BAC Information

Click to search

BAC

Clone NameMSMg01-082O03
Chromosome13 (Build37)
Map Location 119,029,449 - 119,178,685
singlet/doubletdoublet
Overlap geneMrps30
Upstream geneEmb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
Downstream geneLOC668309, LOC100041278, Fgf10, LOC100041298, LOC100041757, Nnt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082O03.T7 (MSMg01no082_o03.b1)MSMg01-082O03.TJ (MSMg01no082_o03.g1)
ACCAG303146AG303147
length675667
length of high quality
(start - end)
171 (75 - 245)414 (77 - 490)
definitionCHROMAT_FILE: MSMg01no082_o03.b1 PHD_FILE: MSMg01no082_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:28 2005CHROMAT_FILE: MSMg01no082_o03.g1 PHD_FILE: MSMg01no082_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,178,515 - 119,178,685)(119,029,449 - 119,029,862)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTAATTATGAAACAAACATGTAACCTTTTGGTATTGTTAAAAACT
CCGTCTAGTTCTAGGTGAAACATTTAGATTAGTACACATATCAATAATCC
ATTCCTTGTCCTTCTGAAAGTGTTTGAAGTTTATAGATCACTGAACAACT
TACCAGTTTATTTGACCTTCCATAATATGTGTGTGTGTGTGTGTGCGCGA
TGGTTGTCAGTGATGAAATTACATCTTCCCCATAAAGCCCCATGTCACAG
CCCAAGTTTCCATGTGACTGACCTTGTACAAGTAAAATGTACTTAAAAGG
AAAAGAATATAGACCTGTACTACAACGATTACTGTTTATACTACAAAATA
CCGACAGCCAATTTTTTTTTAACACTATATGACCCTGCTTATAAGCCCCG
AACCCCCTCTCACATTCCTGACCCTAATGAAACTCTCATTTTGCACTTCC
ATTCTCCCAGAACAATCTCATCCCACCGTCTAACCTCCTTAATCCTTAGA
ACATATTACCTCCCCCCTAACTTATGCCATCCTAACTCCACAGCTTCTTA
GCCATTCTGAGCCCCATTCCTAATCCCTACCCCTCCCGCCAATTATGCCT
TGCACCCCCCCTAACTTGACCCCCC
AATGCATGGGGAGCCTGGCGGCGCCTTTCGTAAACATTAGGTGACCTATA
GAATTCCCGCGGAATTCAATGTAGTGAATAATATTGTTGGCTTTTAAATC
CTATTTTGAATTCTGTTACTTTTTTTGGTGGGTGGAGACTGAAAGGAAAT
GGAAAATTGTTCCCTGCTAACATGAAAAGATAAGACAGATGGCTCTGTAC
TTTGTGGCTTTTTTTTTCTATTGAAAGCATATTATTAACTATCATTTAAC
TCTGATTTGTCCGACTGTAAAACAATTGATTATTTTAATAGTCAAGAAAG
AGTTGTCACTTTCAAATTTTTCTTAAGCTGAGGGTCGTAATCACTTCCTA
CAGGAACTAAATTGCAGCAATTTCCACTGTTCAGCATGTGATACTATAAC
AGTCTAACATTAAATATTTCTCAGGTGGGGAAATGGCTATATGGGGGAAT
CTAAGAATAAGTACTTCATTATGCATTTTCAAAAGAAATAACAGTTATCT
TGGTTCTATTCTCTAAAACCCATAGCTGTCTCATTTTCTTTAGTTCACTG
TTCAAATAAGAGTTCCATAATTTTATGATAGAATGTTACATTGCCTGCCT
TACTGTGACAGATTAAACTAAGCATCCTAAAGCCTTCTATTAACCTTCAT
TAAAACTGTGTGTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_o03.b1 MSMg01no082_o03.b1 CHROMAT_FILE:
MSMg01no082_o03.b1 PHD_FILE: MSMg01no082_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:28 2005
         (171 letters)



>mm_chr13_119178315_119178885
          Length = 571

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaccttttggtattgttaaaaactccgtctagttctaggtgaaacatttagattagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gtaaccttttggtattgttaaaaactccgtctagttctaggtgaaacatttagattagta 312

                                                                       
Query: 61  cacatatcaataatccattccttgtccttctgaaagtgtttgaagtttatagatcactga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cacatatcaataatccattccttgtccttctgaaagtgtttgaagtttatagatcactga 252

                                                              
Query: 121 acaacttaccagtttatttgaccttccataatatgtgtgtgtgtgtgtgtg 171
           ||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acaacttaatagtttatttgaccttccataatatgtgtgtgtgtgtgtgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no082_o03.g1 MSMg01no082_o03.g1 CHROMAT_FILE:
MSMg01no082_o03.g1 PHD_FILE: MSMg01no082_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:28 2005
         (414 letters)



>mm_chr13_119029249_119030062
          Length = 814

 Score =  801 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataatattgttggcttttaaatcctattttgaattctgttactttttttggtgggtgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatattgttggcttttaaatcctattttgaattctgttactttttttggtgggtgga 260

                                                                       
Query: 61  gactgaaaggaaatggaaaattgttccctgctaacatgaaaagataagacagatggctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaaaggaaatggaaaattgttccctgctaacatgaaaagataagacagatggctct 320

                                                                       
Query: 121 gtactttgtggctttttttttctattgaaagcatattattaactatcatttaactctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactttgtggctttttttttctattgaaagcatattattaactatcatttaactctgat 380

                                                                       
Query: 181 ttgtccgactgtaaaacaattgattattttaatagtcaagaaagagttgtcactttcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtccgactgtaaaacaattgattattttaatagtcaagaaagagttgtcactttcaaa 440

                                                                       
Query: 241 tttttcttaagctgagggtcgtaatcacttcctacaggaactaaattgcagcaatttcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttcttaagctgagggtcgtaatcacttcctacaggaactaaattgcagcaatttcca 500

                                                                       
Query: 301 ctgttcagcatgtgatactataacagtctaacattaaatatttctcaggtggggaaatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttcagcatgtgatactataacagtctaacattaaatatttctcaggtggggaaatgg 560

                                                                 
Query: 361 ctatatgggggaatctaagaataagtacttcattatgcattttcaaaagaaata 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatatgggggaatctaagaataagtacttcattatgcattttcaaaagaaata 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)