BAC Information

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BAC

Clone NameMSMg01-083N04
Chromosome13 (Build37)
Map Location 4,861,471 - 4,861,785
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039279, Net1, Tubal3, Ucn3, Akr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083N04.T7 (MSMg01no083_n04.b1)MSMg01-083N04.TJ (MSMg01no083_n04.g1)
ACCAG303840AG303841
length758740
length of high quality
(start - end)
321 (42 - 362)221 (70 - 290)
definitionCHROMAT_FILE: MSMg01no083_n04.b1 PHD_FILE: MSMg01no083_n04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:40 2005CHROMAT_FILE: MSMg01no083_n04.g1 PHD_FILE: MSMg01no083_n04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATGACTACCATTTGAAAGTATGAGCCCATGTACTAATAATCATGTTATC
TTGGGCAATCTACATCAAAGTATCTTCTCAAGCTCCCCCAAACAAATCAG
AAGTGTCTACAGTTCTGAATAAACAATGAACCAGTGAGAAAAACTGGGCC
TTAATCATCACTGATGCTCTTGCATGCATCTCCATTGCTATAGGGGAGAG
GTGAGAAAAAGGTGTGCCTGCTCAGACAGATTAACTACTGGAGTGTCAAC
CATTGATATCACAAGCACTATATCTCCTCGACCGAACTTTATATGCTTTG
TATCATAATGTATATAATAAGTTCCAAGAACAGGTCTTTTATTCAGAAAA
AAATATATAATAGTTCACCCTACAGAGAAAATTTTCTAACTTTCATATCA
TAATAATGCTTGAACCATTGCAGTCGTTTATAGAGATTTATGTTAAGTTT
TTAGAATTACTGATGAATTTCATACTAATGTAGTTCATCTGATTCTTGAC
GCTTATGTTTTATGTATCTACTACATTTCTTGTATGTACTCTACTTACTA
CTCAATAGTTATTAATCCTAAATTTATATTTATTATTATCCTTTTGACCT
TACCTTATATTAATTACCTTCATTTTTATTTCCTCATAATGCCTTTTTAT
TTGCACCTATCTCCCTCCTTATATATCACCATAAAATATTTAATAATTTC
TATAAACA
AATGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGGCTGCCTGAAGTTCTTTCTATAGAGTTG
AGGTTACCTAGTCTTTCCCCATGTACATTTTTGTTGTCCTTGTTCAGCAC
ATGTTTAGACAGTGATGTTAGTGACATTTTCTGGATATAGTTTCTAACTT
TACTAGGGGATACAATCTCACCGAAAACATTCTGGCCTTTTTGCTCTTTC
AATCTTTCTAACCCTTCTGCAATGTTTTCAGAGCCTTAGGTGAGAGAGTT
TTTTATAGATGTATCTGTGTCTACTGTGTTCAACAACTCTATGTTTGATT
GACTGCAGTTTTTTCTTAATTGCGCTTGTTTCACAGTACCATTTTTCTCA
TTGTATTATGTGCACTTTATTTATGGACTTTATATCCAGATATTTATTAT
TTATACTAGTAATCTGTTTATATTTTTTTATCGCTCACCGTACCTTCTTT
CTTCGAATTTCTTTAACCTTCTAATACTTGCCTCTTTCTTATTGTTTCTC
GTTCTTTCCCCTTCTTTCCACTTTATTCTGTCTCTTTTATATCTCTTCTT
TTTTTTTACTTTATTATTTTCTCATCCTTATTTTTTTACTCTTCTCTATA
TATTAATTTTTTTATTAAACTCTTTTCATCTTTTTACTTTATTTTTTTCT
TCCCTCTCCTTCACTCCACACTCCTCTTTCACATTCTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_n04.b1 MSMg01no083_n04.b1 CHROMAT_FILE:
MSMg01no083_n04.b1 PHD_FILE: MSMg01no083_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:40 2005
         (321 letters)



>mm_chr13_4861267_4861987
          Length = 721

 Score =  542 bits (280), Expect = e-158
 Identities = 307/316 (97%), Gaps = 2/316 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgactaccatttgaaagtatgagcccatgtactaataatcatgttatcttggg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcatgactaccatttgaaagtatgagcccatgtactaataatcatgttatcttggg 460

                                                                       
Query: 65  caatctacatcaaagtatcttctcaagctcccccaaacaaatcagaagtgtctacagttc 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 459 caatctacatcaaagtatcttctcaagctcccccaaacaaaacagaagtgtctacagttc 400

                                                                       
Query: 125 tgaataaacaatgaaccagtgagaaaaactgggccttaatcatcactgatgctcttgcat 184
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 399 tgaataaacaatgaaccagtgagaaaaactgggccttaaccttcactgatgctcttgcat 340

                                                                       
Query: 185 gcatctccattgctataggggagaggtgagaaaaaggtgtgcctgctcagacagattaac 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gcacctccattgctataggggagaggtgagaaaaaggtgtgcctgctcagacagattaac 280

                                                                       
Query: 245 tactggagtgtcaaccattgatatcacaagcactatatctcctcgaccgaactttatatg 304
           ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 279 tactggagtgtcaaccattgatatcacaagcactatatcccctcgacagaactttatatg 220

                           
Query: 305 ctttg-tatcataatg 319
            |||  ||||||||||
Sbjct: 219 -tttcatatcataatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)