BAC Information

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BAC

Clone NameMSMg01-084M19
Chromosome13 (Build37)
Map Location 8,803,880 - 8,803,985
singlet/doubletsinglet
Overlap geneWdr37
Upstream geneLOC791083, LOC382722, Adarb2, EG666941
Downstream geneLOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084M19.T7 (MSMg01no084_m19.b1)MSMg01-084M19.TJ (MSMg01no084_m19.g1)
ACCAG304552AG304553
length729739
length of high quality
(start - end)
106 (143 - 248)80 (166 - 245)
definitionCHROMAT_FILE: MSMg01no084_m19.b1 PHD_FILE: MSMg01no084_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:55 2005CHROMAT_FILE: MSMg01no084_m19.g1 PHD_FILE: MSMg01no084_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTXXXXXXXXXXXXXXXXXXXXXXXTATTTTCGAAAGGATCCGCGGAA
TTACAGGCAGAACCCAAGAAAGACAACCGCACCCTATGTAGCTTGCAGGT
GAAAGGCTCTCTAGGTAGCCTGGGAAGGTGATAGTCGTGGCAGACAGTTA
TATAGGCAACCAGAAGCGCTTGTCTTGAACAGCTTGGATACCTCTCAGTG
CCAGCCTTTCTACTGCACGAGTGAGCCTTTTGTTCTCTCCTTCTAGACAT
CTCTGTTCATCTGATGTTTGTAACCTTGTGCTTCATACCGAGTTACCGCT
TTGACAAAGAGACATCTCATGTACTGCCCCTATGGCATTAACCCTTTCCA
TACCGCCCTACTGACAGTGACCATTTATCTAGAAGAGAAGAGGTAATACA
CTGTTATTGTCACCCCTCCATCCCCACCCCCAACCCCTGGTTTTCTCTTT
GTTTCGATGTAAGAGTCCATCTGTAACTTATAAAGAGGTACCAAGTCTTG
CTAAATATGTCTAATGTGCTTTAGCAATTTTGTGAGGCACTATCCAAAAA
TGAAAATTTATATTATTGAAATATTAGACATGATCACCCAAGCTGCTTGT
TCTTATCTCCCTCCCATCTTACTCATCTCAAAAAACTCTATGTAAATTTA
GTTATCTGCACTTCTCACCCATCTAATCTGCTCTTCCTCCATATTTTATA
TATTTACCGATACAAATATTCACATTTAT
ATTGCTGTGTGAGGTCTGGCGTGCGCCTGTTTCCCAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATATTCATCTTCTGAGAAATATAGAAAG
AATGTAGCACAAAGAAAATCACAAACACTGAATAACCAGAACGTGTAAAT
CATGTGTTTGCTTATGGACACAGCAAGCACTGCCACTTATAATGTTTCCT
CCGTGAATTATGTATGAGCTGCGGCTTTGCGCTCTCATTATTTCTGGCTT
TACCACCATTGAGGAGACCTTGTCTGTTATCTCCCATGCATGATATATAA
TACTTCTCAACGATCAGACCAGGTGTCTTATAGCCTTTCCTTTGATACTA
TAGAATGATTTACTAATGTTCTCGTTGAGTATGCTCATCCCAATCTTTAC
TGTTACACTATTATATTCCTCTATTCATCAATTGTTAAGGTCTCATTTGT
CATCTTACTTCCTTTTTCATAATCATGGCCAGGACATTGAATACATTTGC
TGAATTTAATAATTACTATATTTTTTATCATTTGAAACTCTTTCTTATCG
TTTGTTATCTGAATACCTAAACTACTGACATCTTATACTTCTATGTCTCT
CTGTCCCTCCGTCTCTTAGTCTTCTCTGTTTTCTCTTGCTTTTCACTTTG
CCTTTATCATGATATTGTTTTTATTATTGTTCTTCATCTGTATCTTTATC
GTCTCTCTTAGTATCCATTAGATCTCCACCTCTCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_m19.b1 MSMg01no084_m19.b1 CHROMAT_FILE:
MSMg01no084_m19.b1 PHD_FILE: MSMg01no084_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:55 2005
         (106 letters)



>mm_chr13_8803680_8804185
          Length = 506

 Score =  197 bits (102), Expect = 1e-55
 Identities = 105/106 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gacagttatataggcaaccagaagcgcttgtcttgaacagcttggatacctctcagtgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gacagttatataggcaaccagaagcgcttgtcttgaacagcttggatacctctcagtgcc 247

                                                         
Query: 61  agcctttctactgcacgagtgagccttttgttctctccttctagac 106
           || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agtctttctactgcacgagtgagccttttgttctctccttctagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 506
Length adjustment: 8
Effective length of query: 98
Effective length of database: 498
Effective search space:    48804
Effective search space used:    48804
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)