BAC Information

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BAC

Clone NameMSMg01-085B21
Chromosome13 (Build37)
Map Location 86,235,653 - 86,236,194
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042862, Ccnh, Rasa1, LOC435373, LOC675662, Cox7c
Downstream geneLOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085B21.T7 (MSMg01no085_b21.b1)MSMg01-085B21.TJ (MSMg01no085_b21.g1)
ACCAG304793AG304794
length1,1971,185
length of high quality
(start - end)
542 (188 - 729)299 (201 - 499)
definitionCHROMAT_FILE: MSMg01no085_b21.b1 PHD_FILE: MSMg01no085_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:27 2005CHROMAT_FILE: MSMg01no085_b21.g1 PHD_FILE: MSMg01no085_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTGCTTNGATTTCTGCACCTAACACTCCTATAGGGAGAGGATCCGCGG
AATTCTTTACTGAATTCTACTCCCTTAAAAGCCAATGAGATGGCGGGCTG
TCTTCTCATCCACTTTAATACTCATCCTCTCCTCTTTTTTTTTCTCTCTC
TCTTCTTCCCATCTTTATTTCTTATAGTGCTATAACCTAATTTGATGCTA
ACCCATTTAGCAAATATGGCTATTATTTTTCTGGGCTCTTTTTAAATTTC
CATTTCTTGAGGTATGTTCTATGTTTTCATTCAGGAATTTCAATGTTGTA
GGCCTTATCATAATAGAAGTATCTAATCCCCTTGGAACTTACTGTTGTAG
ATACAGCTTTATCAGGACCTTTTATTAAAAATGTGGACCTGGAGCCAGGC
TTTATTAGTGCCTGCCTTTAATCCCAGCATTTGGGAGGCAAAGACAGGTG
AATTTCTGAGTTTGAGGCCAGCCTGATCTACAGAGTGAGTTCCAGGACAG
CCAGGGCTACACGAAGAAACCCTGTCTTGAAAAAACAAAAACAAAAACAA
AAACAAAAAAACAAAACCAAAAGCAACAAAAAATGTGGACCTATTCTCAA
ATCACACTTTTGATCATTTTGCTAAAACTCAGATATCTATGGCTGTGTAC
ATTTGCCTTTGGTCTTTTACTCTAGTGCATTGGTCTACTGTGTTGGTTTT
GGTGCCAGTACCCTGCTGTTTTTGTTTCCATGGCTCTGTAATACAATGGG
AATTTTGTTATTTTGGTATCTCCAGAGAAGTCATTTTTCCCCTTTTGGAT
TGTTAAATACTTTTTATGATTTTTTTTTCTGAATAGAGTTCATTCAGTGG
ACTCCTTACAATTTCTTGAGTTATTTCATTGCTCCACAAACTTTTATTAA
CTAATTAAAAATCATTTTTTAAAGCTATTTGCTTAATTGGTTTGTGTATA
AGGTAATTTTTTTTTCTTTCTCTGGATTTCTCCAAACCCCCATTTTGGTT
TTAAAATTTTTGGTAATTCTATTAAATCTCCTTCCTTTGGGTCTTGTTAA
TTTTTTTCAAAATGGGTATTAGGGTATTAAATTTTTTTAAATAATGGTTT
TAATAAATATATATCTTCTTTAATATTCTTGTATCGGTCCCACCTTTTGT
CGTATAAACATATTCATCTTTATAATGAATTATTTATTGTACTATAA
CTTTTTTATAGACGTGAGCCTGTGGGCGCCGGNCGCCCAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACCTTTAAACTGACGAATGCCAAATGGCACA
GAAGCACCTGACCCTTTGATCAACATCCCTAATCATCAGGTAAATGCAAA
TCACAACAACCCTGAGATTCCACATCACACCAGTCACAATGGCTAAGTTC
AAAAATTCAGGTGACAGCACATGCTGGAGTGGATGTGCAGAAAGAGGAAC
ACTCCTCCATTGTTGGTAGGATTGCAGGCTTGTACAACCACTCTGAAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGCACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGATTTTTGCTCCACTATGTTCATAGCAGCCTTATTTATAATAACCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCGTAAGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGACCTCACACAATATGTACTCACTGATAAGTG
CATATTACCCCCAAACCTAGGATTCCCAAGATATATTATACAATTTTGCT
TAACACATGAAACTCATGAATAATGAAGACTGATATGTGGACACTATGCC
CCTCCTTATAATTGGTATCTAAACATCCATGTTATGTATTATCGAAAACA
TTTTTTGTAACTTTATATTAATGGATGTACCTCGTCAAATATTGTCATAT
TCTTGTTATTTTCCTTTTTAACCATTATTCTCATATGCTTGACATCTTTT
GTTTTACACCTATTATTGATTATTATCTGAATGGACTCCTTCTATTGTTT
TTTTCTTCTTTTTTTTCAATATTTTCTTTTTTTTTCTTTTTTTCTTTTAT
TTGTTTTTTTCTCTCCTTTCCATTCATTTTGTTTGGTTTTTCCTTTTGTT
TTTTCTCTTTGTAGCTTGCTTTAATTTATATTATTCCCCTTTTTATCTCT
TTCCATTTATTTTCTGTTCTTTTTATATCTGTTTTCTTATATTTTTTCNC
TTTTTATATCTTCTCTCTTTTTTACCTTCTCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_b21.b1 MSMg01no085_b21.b1 CHROMAT_FILE:
MSMg01no085_b21.b1 PHD_FILE: MSMg01no085_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:27 2005
         (542 letters)



>mm_chr13_86235453_86236394
          Length = 942

 Score =  940 bits (486), Expect = 0.0
 Identities = 528/542 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttgatgctaacccatttagcaaatatggctattatttttctgggctctttttaaat 60
           ||||||| |||||| || |||||||||| | ||||||||||||  |||||||||||||||
Sbjct: 201 taatttggtgctaaaccttttagcaaatcttgctattatttttgggggctctttttaaat 260

                                                                       
Query: 61  ttccatttcttgaggtatgttctatgttttcattcaggaatttcaatgttgtaggcctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccatttcttgaggtatgttctatgttttcattcaggaatttcaatgttgtaggcctta 320

                                                                       
Query: 121 tcataatagaagtatctaatccccttggaacttactgttgtagatacagctttatcagga 180
           || ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 321 tcgtaatagaagtatctaatccccatggaacttactgttgtagatacagttttatcagga 380

                                                                       
Query: 181 ccttttattaaaaatgtggacctggagccaggctttattagtgcctgcctttaatcccag 240
           |||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||
Sbjct: 381 ccttttattaaaaatgtggacctggagccaggcagtagtagtgcctgcctttaatcccag 440

                                                                       
Query: 241 catttgggaggcaaagacaggtgaatttctgagtttgaggccagcctgatctacagagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catttgggaggcaaagacaggtgaatttctgagtttgaggccagcctgatctacagagtg 500

                                                                       
Query: 301 agttccaggacagccagggctacacgaagaaaccctgtcttgaaaaaacaaaaacaaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttccaggacagccagggctacacgaagaaaccctgtcttgaaaaaacaaaaacaaaaa 560

                                                                       
Query: 361 caaaaacaaaaaaacaaaaccaaaagcaacaaaaaatgtggacctattctcaaatcacac 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 caaaaacaaaaaaacaaaaccaaaagcaaccaaaaatgtggacctattctcaaatcacac 620

                                                                       
Query: 421 ttttgatcattttgctaaaactcagatatctatggctgtgtacatttgcctttggtcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttgatcattttgctaaaactcagatatctatggctgtgtacatttgcctttggtcttt 680

                                                                       
Query: 481 tactctagtgcattggtctactgtgttggttttggtgccagtaccctgctgtttttgttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tactctagtgcattggtctactgtgttggttttggtgccagtaccctgctgtttttgttt 740

             
Query: 541 cc 542
           ||
Sbjct: 741 cc 742


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)