BAC Information

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BAC

Clone NameMSMg01-085M03
Chromosome13 (Build37)
Map Location 8,397,712 - 8,397,968
singlet/doubletsinglet
Overlap geneAdarb2
Upstream geneLOC791083, LOC382722
Downstream geneEG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085M03.T7 (MSMg01no085_m03.b1)MSMg01-085M03.TJ (MSMg01no085_m03.g1)
ACCAG305247AG305248
length1,3852,042
length of high quality
(start - end)
257 (112 - 368)---
definitionCHROMAT_FILE: MSMg01no085_m03.b1 PHD_FILE: MSMg01no085_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:57 2005CHROMAT_FILE: MSMg01no085_m03.g1 PHD_FILE: MSMg01no085_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCT
GTAGATCAGGCCACTTCAAAAACTCACAGATCTGCCTGCCTTACCTTCCC
AGCCCTGTAACCAAAGGTGTGTGCTACTACTGCCTGGCGGAAACTAATCA
TTTTAAATTACTTTAAGCCTACAAAAGATTAAAAACAAAGCAAAACATGT
ATCCGTGCAATCTTTGTATTTTACATACATATCTCTGTGAATGAACTTTG
CATGTAAACTTTATATGTGATCTAGACTTTACAAATATGGTACGCTTTAG
GTATGATTTGAGGGTTGCCAGATGAAGATCTTGAATTGAAGTTTGCTCTC
CATTTTAAAATAAAGGGGGAAGGGAAACCTAAACTAAGAAGGTTTTTTTT
CTCCGCCGAGCCCCCGTGATGGTCTTCATAAGTGAGGCCTTACCAACTAT
TTATACCCCACACGGTCCCGATGTCCAGATGCCCCCTAACTGAGTTCGCT
CAATTTACTATCCCTTTATTTTGTATCATTATTCTTTACTTTATTTTTTT
CTCCTTTTCTTTTTTATTTTTATTTCCTTTTTCTTTTTCTTTTATTTAAC
TTTATTATTTTATGCTTTCTTTACACTTTTTTTTGTATTTTTATCTTTCT
TTTTCTCCTTATTCTTTTCTTTACTATATTCTTTTCTTTTATTCATCTTT
TACCACCTCTTTCTATTTTTTCTCTATATTATAATCTTCCTTTTACTTTT
TTATTTTATATATCTTTACTTCTATATCTCTCTTTTTCTACTTCTTATCT
ATTTTTCTTTATTTTTTCTTTTATCTCTTATTTTTTTACTTTTGAATTTT
ATTATTTCTTCTACATTATCTTATTTTCTATCTTTTTCTCTTCTCTTATC
TTTCTACTTTATCTACGTTACATTTTCTTATTTATTCCATTTCTAATCAT
CTCTTTTATCTATTTTTCTTACTCTCTCATTTCTTCCCTTTTCTATTTAT
ACTTATCATCTCTCTTTATTCTTTTTATTATATCTTTCTCTTTTTTTTAT
TATTTTTATCTCTCTTCTCCTATATTCTTCTTTTCTCTTTAACTTTCTTA
CTTATTCCTTTCTTATTTATCTATTATTTCTATTTTTCTTTTTCTTCACT
CTTTCATTCTACACATCTTTTACTATTATTATCTATTCTTTTTATCTTTC
TAATTTCATGTATTCTCATCTATTTCACTTATCTTTTTTCTTTCTCTCCA
CTTATTTGTCCTTCTATATTTCTTATTTTCTCATTACTTTTATACTTATT
TCTTCCTACTTCTTACTTCTATCTATCTTATTTTATCTTTCATTCACTAT
ATTATACTATTTGTATTATCTGTATGACTATTAAA
CGCCCTACTTGTACAAAGTCACCATAAGAAGGGCGGTGGGAGGCGCCGGG
CTGGTACCGCTACGGAGCCAACAACTAAACTTGAAGGGCGGAACACGCTA
GTAGGGGTTGGTAGGGTGGGCCCCCCTTATAGGGGGGGGGCGCGAGTGGT
ATGGGAACAGTNACCGCCCGCGGCGTCGGCGGAGGACGCCTCTTTATAAG
AGGGGGGGCCCGCCGCGGAGAGAGGGGGGTACAATCCGGCGTGGTGCCGC
GCCGCGGGCGCGACGGCAAGAGAGCAGCCGCTGCGGCCGCGTCGGAGCGC
GAGGCGGCGTGCTTTTTAAAAGGGAGGGAAGCCCCCCCCCACGCCGGAAG
ACCGAGCAGTGAACTGGTGCCGGCGGGATGCGGGGGGGGGCCGCGGCTCC
CACCGCCAGGACGAGCTGGAGGCGCATGACCGCGTCTATCGCTGGTGGCA
GCGCGGCTGTACTCGTTGCCCGCGTCAGCCCAACGGGAGTGCGCGAGCGC
GTGGGCGGCTCACGTCCCGCGAGACCCCGCTGCACATACGTCGCCCACCG
GGGGCCCATTCTAGCGCAGCGGCCGCGGCGCGCGGCGGCGCCGCCGCGGG
CGGGTGCGGCCGCGGGCGTGCGCGGTGCGGGGTGGGGGCGCGGCGGATGT
TCTTGTTTTTTACGCGCTGGCGTGTGAGGCACTGGCCGTCCACCTACCTC
GTGGCGGCGGGGGGGAGGGAAACGCGGCAGGGCTCTTTTTTTTTCTTGCC
CCCCCCCCCCGCCCAGGAGGCGCGGAGCCCCCCCGCTCCCCACACAAAAA
AGGGGGGGGGGGGGGGGGACACCACCAACTCGACCCCGCTGACGCAGGGC
TGCCCACCCCCTCCGATGCCCGTCTGCTGGGAGCCTCGGACTAGCTCGCG
GGGCAGACTGGACCGGTGCTGGCGATCCGCGAGCAGGCTATGGCAGCCAG
TTGGCGTAAGCCGGCGCGGCGGGAGCGATGGCGCGCGGATCGAGCAGGGG
CACGGCGCGGGCCATCGGGGCGCCGCGCCCGCGGGCGCAGTCCCGAGGCG
CTGCGTGCGACCACGCGCGAGGCGGGCGGCCGCCATGAGCCTCGGGAACG
GGCGCGGGGCCCCAGCGAGGCGGCGCGGGGGCGCCTCCGCTGAATGGGGG
CGCGGGACTCGGTCGCGGTGACGGGCCCGTCCCGGGGCTGGGCGGCGCTA
GGCGTGCCGGGGTACGGCGCGCTCCGGGCAGGACGCCCCCCCGAAGCGAT
TGTGGGTCCCGACGGAAGACTGCGCCCGAGGGTAAGAGCGGCACCGGGGC
AGCTGCGGCTAAGAGCCGACCGCGCTGACACGCGCCGTCAGGCAGGTCGC
GCGCGACCTCGCCGCGAGGACACCCCGAGCGCCGCAGGGCTGCGCGTGGG
ATCTGCCGGGATGAGACGGGGCGGGTGCGTGCGACGCGAGGCCTCTGTTG
CGTGCCTGAGTGAGCGCAGCGCGGTGACAGAGCGGCCGCGAGCAGTGCCC
GCGCGCTCGGCGCGGGAGCTGTAGGCGCTCCTGCTGTGAGCGGGCTGGCG
CCGGTGCCGCGCCAAGCCAACGAGACTCCCAGCTGTGCGGCAGAGCGCCT
CAGTGTGCACCGCGACGCTAGCGTGACCGTCGGTAGCATGCGCGCGCCCG
GGCATGCGCATGAACTTTAGGCCTACTGGTGAGCGCTGCGAGGTGTGCGT
GTCTGCTGCAGACAGTACCAGTGGCGGGTCTGGGCCGGGCGTGCGGCCCG
CGGGTAGCGTAGCTGAAGAGGTGGCGCAGCGCGCAAGCGTGCGGACGGAC
CACCGATCGTTGCGACGCAGAGTCGCTCGCAGAGTACGCGCAGACCGGCA
TCGTGGTGATGATGACGGGCATCGCTAGCGNACGANACCGAGCGTGCCAG
ACCGCGGACAGAGGTACGGCGCGTGGCGGGCGGCTTCGCGAAGCTAACGC
GCTTGAGCAATCGGAGCGGACACGCGTGNGGATGACTACCTCTGCGCGCG
GCGTTACTGCCGCGGGCGACTCTGCCAGCGCACGCATGCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_m03.b1 MSMg01no085_m03.b1 CHROMAT_FILE:
MSMg01no085_m03.b1 PHD_FILE: MSMg01no085_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:57 2005
         (257 letters)



>mm_chr13_8397512_8398168
          Length = 657

 Score =  458 bits (237), Expect = e-133
 Identities = 252/257 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggtgtgtgctactactgcctggcggaaactaatcattttaaattactttaagccta 60
           |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||
Sbjct: 201 caaaggtgtgtgctaccactgcctggctgatactaatcattttaaattactttaagccta 260

                                                                       
Query: 61  caaaagattaaaaacaaagcaaaacatgtatccgtgcaatctttgtattttacatacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaagattaaaaacaaagcaaaacatgtatccgtgcaatctttgtattttacatacata 320

                                                                       
Query: 121 tctctgtgaatgaactttgcatgtaaactttatatgtgatctagactttacaaatatggt 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctccgtgaatgaactttgcatgtaaactttatatgtgatctagactttacaaatatggt 380

                                                                       
Query: 181 acgctttaggtatgatttgagggttgccagatgaagatcttgaattgaagtttgctctcc 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 acgctttaggtatgatttgagggttgccagaggaagatcttgaattgaagtttgctctcc 440

                            
Query: 241 attttaaaataaagggg 257
           |||||||||||||||||
Sbjct: 441 attttaaaataaagggg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 657
Length adjustment: 9
Effective length of query: 248
Effective length of database: 648
Effective search space:   160704
Effective search space used:   160704
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)