BAC Information

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BAC

Clone NameMSMg01-085N18
Chromosome13 (Build37)
Map Location 65,174,897 - 65,175,214
singlet/doubletsinglet
Overlap geneHiatl1
Upstream geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274
Downstream geneLOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085N18.T7 (MSMg01no085_n18.b1)MSMg01-085N18.TJ (MSMg01no085_n18.g1)
ACCAG305321AG305322
length1,0931,280
length of high quality
(start - end)
183 (16 - 198)319 (81 - 399)
definitionCHROMAT_FILE: MSMg01no085_n18.b1 PHD_FILE: MSMg01no085_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:12 2005CHROMAT_FILE: MSMg01no085_n18.g1 PHD_FILE: MSMg01no085_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAAAGAGTTCCCCATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAATGATCCTTTCCCAATCTTTTGGTGGTCTTTTTGTCTTACTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTCTCATTAGGTCCCATT
TGTCAATTCTCGATCTTACAGTACAAGCCATTACTGTTCTGTTCAGGAAT
TTTTCCCCTGTGCCCATATCTTCAAGGTTTTTCCCCATTTTCTCCTCTAT
AACTTTCACTGTCTCTGGTTTTATGTGAAGTTCCTTGTTTTTTTTATATT
TGACCTTATTACCATGATATAAGTATGGACTCTATTCTCATTCTTCTACA
CCATAACATCCATTTGTGTCATTCTTTATTGTTGAATCTGTTGTCTTTCT
TTCTTTGGATGTTTTTATCTCCCTTGTCTAATATCATTGGTATCATATTT
GTTGTGATTTTATTTTTAGTTTCTTTTTTTTTTTATTTATATTTATCTCT
TTTTTTCCTTTACATTATCTATGTTTTTTTTAACTCAATTAGTTTTGTTC
TCTTTTATTTTTTAATTTCTTTGTTTACTTTCATCTTATTTATTATATAT
CTCTTATTATATTATTTCCGTTTCTTTATTTTTTTTTTTTTCTACATTTC
TTCTTTTTTTTTATCTCTTTATTTTTTTCTTTTCTATTTATTTTTTCTTT
TATTTTTCTTTTTTTTTCTTTTTTTTTTTTTTTATTTTATTTTTTCCTTC
TTTTTTTTTTATTTATTATTCTATTTTTTAATTCTTAATTTTTTCTTTTA
TTTTCTTTTTATTTATTTTTTATATTTTATTTATTTATATTTTTATTTCT
TTATATCTTATTATTTATTCTTTTTTTTAATTTTTTTCCTTTTTTTTATT
ATTTATTATTTTCTTATATTATATATCATTTTTTTATTTTTTCTTTTAAT
TCTTTTTAATTCTCCTATTTTTATTATTTTTCTTTTTTTTTTATATTTTT
TCTTCCCTATATTTATGATTACTTAATTTATTTTATTCCTTTACTTCTAT
TTCTATATTATTTGAGTTTATTATTATTATTTTTCTTTATTTT
TTTTTTGCAGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCTTTTACCATACCTATGAATGCTACAATTTTCA
CAGATCCCCATCCTATAACCTGCAAAAACAAAAGCAAAATAAAACAACAA
CAACAAAAAAATACTTTTGTAATACAGGTGTTAGAGATATAATTAGTAAG
AAATGGTAGGAAAAATAATTGAGGAAAGTTCACAACAACTGAAATTAGGA
CAGAGACAGAAGCTGAAAAAAACCCTATAATTTATATTTAAATATGACAT
AAAATAGTTGTAATTAGTAGGCATGAATTGTGAATTTTAAAAAAAAATGT
TATTATGTCTCATGTTTTAGCATTTCTTCTCTTAATTAGTCTATGTCATT
TTTTATACAATGAAAGCCCACAAAAAAGTATAAAAGAAAGCAATTCACCT
TTTAATGTTGCCCAACCAGAACTGGACTACCAGCCAAGTCGGTGGCTCTT
GAGTCTGGGTGTGTTTTATATTTATGTGGGCTACACAATACTGATCAGTA
TGTAAGGATAGGTAGATATACTATATTACGCCAGAACACCCTGAAGACCA
TTTATTTCCATCTCTGAAGTATGGTCCTAATAACCTTTGCGCTTTTATTA
TTCCCTTATATTTTTCTTTTTTCTTTTTTTTATTTTGATTGTTTTTTCGT
TTTCTATTATCTCCTATTTTTTTTTTTACCCCTTATTTATTTTTTATCTT
TTAAATTTCTTTACTCTGTCTTTTTTTTCTTTTTCTTTCATATTTTATCA
TTTCCCTTTTATTACTTTTTTTTCTCTATTTTTTTCTTTCTTCTTCTTTT
TATCCTTCCCTCCATTTACTTTTTTTTCTCTTTATTTCTTTTATTCTCAA
CTTTTTTTTTTTCTTTTTATTTTTTTCTTTAATTTTCCTTTCTTTTCTTT
TCTTTTCTCTCTTCTCTTATTTTCTATTTTCTTTTTTTTCTTATTTTTTT
TTTTTACTCTTTTTCCCTCTTTATTCTTCTTTCTTTATTCACTTTATTTC
TTTCTCTTCTCCGTTTTATCTTATCTTTCTCTTTTCTTTTTTCCCCCTTT
ATTTCTCTTCATATTTTTTATTTTCTCCATTTTATTCTCGTATTCCTTCT
TTTGCTTCTCTTCTCCTATTATCCTTCTCTTGCTCTATCTTCTCTTTCCA
TCATTCATTCTATCCTTCTTTCATTGTACTCTCTTCGCCTCTTTTTCTTC
NTATCTCCTACTATCTTTCTCTCTTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_n18.g1 MSMg01no085_n18.g1 CHROMAT_FILE:
MSMg01no085_n18.g1 PHD_FILE: MSMg01no085_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:12 2005
         (319 letters)



>mm_chr13_65174697_65175415
          Length = 719

 Score =  576 bits (298), Expect = e-169
 Identities = 313/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaatgctacaattttcacagatccccatcctataacctgcaaaaacaaaagcaaaat 60
           |||||||||||||||||||||||||||  | ||||||||||| |||||||||||||||||
Sbjct: 201 tatgaatgctacaattttcacagatccaaaacctataacctgtaaaaacaaaagcaaaat 260

                                                                       
Query: 61  aaaacaacaacaacaaaaaaatacttttgtaatacaggtgttagagatataattagtaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaacaacaacaaaaaaatacttttgtaatacaggtgttagagatataattagtaag 320

                                                                       
Query: 121 aaatggtaggaaaaataattgaggaaagttcacaacaactgaaattaggacagagacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatggtaggaaaaataattgaggaaagttcacaacaactgaaattaggacagagacaga 380

                                                                       
Query: 181 agctgaaaaaaaccctataatttatatttaaatatgacataaaatagttgtaattagtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agctgaaaaaaaccctataatttatatttaaatatgacataaaatagttgtaattagtag 440

                                                                       
Query: 241 gcatgaattgtgaattttaaaaaaaaatgttattatgtctcatgttttagcatttcttct 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gcatgaattgtgaattttaaaaaaaaatgttattatgtctcatgttttagtatttcttct 500

                             
Query: 301 cttaattagtctatgtca 318
           ||||||||||||||||||
Sbjct: 501 cttaattagtctatgtca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)