BAC Information

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BAC

Clone NameMSMg01-086K10
Chromosome13 (Build37)
Map Location 76,957,138 - 76,957,323
singlet/doubletsinglet
Overlap geneMctp1
Upstream geneGlrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128, Gm276, LOC666603
Downstream geneEG666607, Ankrd32, 2210408I21Rik, LOC631139, LOC675063, D13Mgi7, 1110033M05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086K10.T7 (MSMg01no086_k10.b1)MSMg01-086K10.TJ (MSMg01no086_k10.g1)
ACCAG305903AG305904
length760688
length of high quality
(start - end)
186 (181 - 366)244 (55 - 298)
definitionCHROMAT_FILE: MSMg01no086_k10.b1 PHD_FILE: MSMg01no086_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:28 2005CHROMAT_FILE: MSMg01no086_k10.g1 PHD_FILE: MSMg01no086_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCCNNNNNNNNNNCCCCCCCCCCCCCCCCTCCTNNCCCCAAAAAAAN
CCGCGTCTATAATTGCGGCGCTAATACGACTCCTATTTCGTACGGAGCGC
GGAATTCCCAGGTTCCCAAAAAAAAAAAGCATGTATGTTGAGATTTCTTC
CAATCTTTTTTTTACTACTGCACCTGGAGATTTGACCCTAGGCTTTCTCA
TCAGCTGACCTAAACATATTTTAAGCATCTGATTGGTAGAATTACATTAA
CTGGCACTCTTTAGTAGGTCCCCTCAGGGCTTCATCTGGAAGTGAGTATT
AATAACAGGGTTTCTCCTTTCTTTCTAAGTTATGAAGCAGGGAACTTTCA
TTGTGGTAAGGAAATTTTCTCATTAGAGCTATAGCTGTCAATTTATTAGA
CCTAAAACTCCTTTTTTTTTTCCTACTGAAAATTTTATAATGCTCTTTTA
ACTATGAAAGTGCCACCACAAAATAATATTAGTGAAGCATTATAATCTTG
AAATTTAACTATTACCAAAGACGAATAAATAGAATTTGGTTCACAATAAA
ACCATACACTGGGCTATTAAAAATATTTACTGAATGTCTACTATGTGCCA
AAACCTACAACCAGGGGACAGGAAGTTCTTTTTCCTCTTTACTTACCTGT
CTACAAGGATGTCAGCATCGACATTAACTTTTGTATATCAATATTTAGAA
GGCTTGTTTGATGTTGCGCTAAACAGTGCACCTAGTTTCTGGTTACTTAT
ATACGACTAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTGTACTCACTGATAAGTGGATATTA
GCCCAAAACCTAGGATACTCAAGATATAAGATACAATTTCCTAAACACAT
GAAACTCAAGAAAAATGAAGACTAAAGTGTGGACACTATGCCCCTCCTTA
GAAGTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGATTGTA
GCTGAGATGAAAGGATGGACCATGTACAGACTGCCATATCCAGGGATCCA
CCCATAATCGCATCCAAACGCTGACACCATTGCATACCCTAGCAAGATTT
TATCGAAAGGACCCCGATGTAGCTGTCTCTTGTGACACTATCGCCAGGGC
CTATTCTATACAGAAGTGGATGCTCATAGTCAGCTAATGGATGGATCTCA
GGTCTCCCTATGGAGGAGCTAGAGAAAAGTACCCATGGAGTTAAAGGGAT
CTGCAACCCTATAGGTGGAACAACATTATCATCTAACCAGTACCCCGGAG
CTCTTGACTCTAGCTGCATATGTATTATAAGATGGTCTAGTCGGCCATCA
CTGGAAAGATAGGCCCATTGGACATGCATACTCTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_k10.b1 MSMg01no086_k10.b1 CHROMAT_FILE:
MSMg01no086_k10.b1 PHD_FILE: MSMg01no086_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:28 2005
         (186 letters)



>mm_chr13_76956938_76957523
          Length = 586

 Score =  360 bits (186), Expect = e-104
 Identities = 186/186 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgaccctaggctttctcatcagctgacctaaacatattttaagcatctgattggtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tttgaccctaggctttctcatcagctgacctaaacatattttaagcatctgattggtaga 327

                                                                       
Query: 61  attacattaactggcactctttagtaggtcccctcagggcttcatctggaagtgagtatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 attacattaactggcactctttagtaggtcccctcagggcttcatctggaagtgagtatt 267

                                                                       
Query: 121 aataacagggtttctcctttctttctaagttatgaagcagggaactttcattgtggtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aataacagggtttctcctttctttctaagttatgaagcagggaactttcattgtggtaag 207

                 
Query: 181 gaaatt 186
           ||||||
Sbjct: 206 gaaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 586
Length adjustment: 8
Effective length of query: 178
Effective length of database: 578
Effective search space:   102884
Effective search space used:   102884
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)