BAC Information

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BAC

Clone NameMSMg01-086K20
Chromosome13 (Build37)
Map Location 65,006,625 - 65,007,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086K20.T7 (MSMg01no086_k20.b1)MSMg01-086K20.TJ (MSMg01no086_k20.g1)
ACCAG305923AG305924
length711719
length of high quality
(start - end)
596 (37 - 632)420 (72 - 491)
definitionCHROMAT_FILE: MSMg01no086_k20.b1 PHD_FILE: MSMg01no086_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:30 2005CHROMAT_FILE: MSMg01no086_k20.g1 PHD_FILE: MSMg01no086_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGTTCAGAGAAGGCGCGGAATTCTACTC
CAAATATCCGTTGTATCTCCTAGAATTATTTTTTAGAATATCTTTCTAAG
CAATGCAATGTGATCTTAATATAAATTTTCAAGTGTTGATACTATTGGAT
TCATAAAGATACAAGACAGAAATCACTCAGATGATTTACAAATGAAGAAA
GTAAAGGCTAAGACTACGTATAGGTCAGCTTCGCATTACAACAGCATCTG
AGACACTTAGGAAAACATTTTGACTCAGGAGTCTGTGACTGCTGTTGTCC
AGGACTCTGAGAACAAGCTTTTCTTCCATTTCTTTGAAATGAAAGTTATT
TTATTTTCTGAATATTTTGTGCTGAATATCTGAGAGTAACGTATGCAAAG
TATCATTGCCTATAAATAATATGGGATCAGCAAATTAGTTATATTGCCAT
TAATTAAAAGAAACCCCTACAAATAACTTTTCAAAGATGGATAATAAGCA
AGAGGTGTCTTTCCATCACCACTGCCCAATTAAATATAATTTTCTTTGTC
TCAAAAGGGTATCCCTAAACGCTGTTTCCCAGTAGAATCTTTGTTAAATA
CTGGCTGTTCAGACTTTTTATGCTTCTAGAATTTCTCATAGCACTGTAGA
CCAGATCTGTACTGGAACAGTTTCCACATGAATAATAAATAATGTGCACA
GGGTGTGGGTC
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAG
TCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA
TATTATCCCAAAATCTATGATACCCAAGATATTAGATACAATTTCCTAAA
CACATGAAACTCCAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_k20.b1 MSMg01no086_k20.b1 CHROMAT_FILE:
MSMg01no086_k20.b1 PHD_FILE: MSMg01no086_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:30 2005
         (596 letters)



>mm_chr13_65006423_65007418
          Length = 996

 Score = 1125 bits (582), Expect = 0.0
 Identities = 591/594 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   ggaattctactccaaatatccgttgtatctcctagaattattttttagaatatctttcta 62
           |||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctactccaaaaatgtgttgtatctcctagaattattttttagaatatctttcta 262

                                                                       
Query: 63  agcaatgcaatgtgatcttaatataaattttcaagtgttgatactattggattcataaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agcaatgcaatgtgatcttaatataaattttcaagtgttgatactattggattcataaag 322

                                                                       
Query: 123 atacaagacagaaatcactcagatgatttacaaatgaagaaagtaaaggctaagactacg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atacaagacagaaatcactcagatgatttacaaatgaagaaagtaaaggctaagactacg 382

                                                                       
Query: 183 tataggtcagcttcgcattacaacagcatctgagacacttaggaaaacattttgactcag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tataggtcagcttcgcattacaacagcatctgagacacttaggaaaacattttgactcag 442

                                                                       
Query: 243 gagtctgtgactgctgttgtccaggactctgagaacaagcttttcttccatttctttgaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gagtctgtgactgctgttgtccaggactctgagaacaagcttttcttccatttctttgaa 502

                                                                       
Query: 303 atgaaagttattttattttctgaatattttgtgctgaatatctgagagtaacgtatgcaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 atgaaagttattttattttctgaatattttgtgctgaatatctgagagtaacgtatgcaa 562

                                                                       
Query: 363 agtatcattgcctataaataatatgggatcagcaaattagttatattgccattaattaaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 agtatcattgcctataaataatatgggatcagcaaattagttatattgccattaattaaa 622

                                                                       
Query: 423 agaaacccctacaaataacttttcaaagatggataataagcaagaggtgtctttccatca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agaaacccctacaaataacttttcaaagatggataataagcaagaggtgtctttccatca 682

                                                                       
Query: 483 ccactgcccaattaaatataattttctttgtctcaaaagggtatccctaaacgctgtttc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccactgcccaattaaatataattttctttgtctcaaaagggtatccctaaacgctgtttc 742

                                                                 
Query: 543 ccagtagaatctttgttaaatactggctgttcagactttttatgcttctagaat 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccagtagaatctttgttaaatactggctgttcagactttttatgcttctagaat 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)