BAC Information

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BAC

Clone NameMSMg01-086M02
Chromosome13 (Build37)
Map Location 64,855,095 - 64,855,487
singlet/doubletsinglet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086M02.T7 (MSMg01no086_m02.b1)MSMg01-086M02.TJ (MSMg01no086_m02.g1)
ACCAG305979AG305980
length680671
length of high quality
(start - end)
499 (32 - 530)400 (54 - 453)
definitionCHROMAT_FILE: MSMg01no086_m02.b1 PHD_FILE: MSMg01no086_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:37 2005CHROMAT_FILE: MSMg01no086_m02.g1 PHD_FILE: MSMg01no086_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAACGACTCCTATATCGAGAGGATCCGCGGAATTCTGTTCA
TGTCGCCTATCTTCCTTTAGGTTGGCTGAAAGATTACTTTCTTGCTTTTT
CTAGGGTTTAGTTTCCCTCCTTGTGTTGGAGTTTCCTCTTTATTATCCTT
TGAAGTGTTGGATTTGTGGAAAGATATTGTATAAATTTGGTTTTGTCATG
GAATACCTTGGTTTCTCCATCTATGGTAATTGAGAGTTTGGCCAGGTATA
GTAGCCTGGGCTGGCATTTGTGTTCTCTTAGGGTCTGTATAATATCTGTC
CAGGATCTTCTGGCTTTCATAGTCTCTGGTGAGAAGTCAGGTGTAATTCT
GATAGTCCTGCCTTTATATGTTACCTGACCTTTTACCCTTACTGCTTTTA
ATATTCTTTCTTTGTTTTGTGCATTTGGTGTTTTGATTATTATGTGATGG
GAGGAATTTCTTTTCTGGTCCAGTCTATTTGGAGTTCTGTAGGCTTCTTG
TATATTCATGGGCATCTCTTTCTTTTGTGTACGGAAGTTTTCTTCTATAA
TTTTGTTGAATATATTTACTGCCCCTTTACCTTGCTAACCTTCACTCCCT
TCTATACTTATCACCCTTACGTTCGATCCTCTCCTTGTGTCTTGCATTTC
CTGGTCGTTCTTGCTTTAGATTTCCCTGCT
TGGCGCCGCCTGGTCCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGTCTCCTTCTGCTGTCTATGGATCCAGATACAGAACTCTTGGCTCC
TCCAGCACCAAGTCTGCCTGCCTGCTGCATGCTTCCTATCATGATGACAA
TGAACTAAACCTCTGAAACTGGAAGCCAGCCCATAAATTGAATGGTTTCT
TTTATAACAGTTGTTGTGGTCTTGTTGTCTCCTCACAGCAATAAAACCTA
AATTAAGACAACAATTATCTCATGCTTTCTTTCCTACGTGGAAGCTAGAC
ATGGAAGCCTTTCAGAATCCTGGTCTTGCATCCCCTGTCTCTGTCATCAT
CCCCATCATCAGACTGCTATGTTTTATGATTATTATTTATAACTAGGTCT
TATTTCTTTATTCTTTATTTCTTTATTCTTTGCTCATATGCTTAAAGATC
AGAGTTGTGGATAGTGTAAGCTTTTCTTTAGTTTGCTTACTTATTACTTT
AATGTTATTGTTCTCAGAAAACTGTATTTTGCTTATTTATTACTTCAATG
TTATTTTTCTTTAGCTTGCTTATTTATTACTTTAACGTTATTTTTCTTAT
AAGGGAAACTATATTTTCGCATGTTGCTTTTCAGACTACTCCAGTCTCAG
AATCCAAGCAATAAGCTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_m02.g1 MSMg01no086_m02.g1 CHROMAT_FILE:
MSMg01no086_m02.g1 PHD_FILE: MSMg01no086_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:37 2005
         (400 letters)



>mm_chr13_64854688_64855487
          Length = 800

 Score =  752 bits (389), Expect = 0.0
 Identities = 392/393 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   ttctgctgtctatggatccagatacagaactcttggctcctccagcaccaagtctgcctg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttctgctgtctatggatccagatacagaactcttggctcctccagcaccaagtctgcctg 741

                                                                       
Query: 68  cctgctgcatgcttcctatcatgatgacaatgaactaaacctctgaaactggaagccagc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cctgctgcatgcttcctatcatgatgacaatgaactaaacctctgaaactggaagccagc 681

                                                                       
Query: 128 ccataaattgaatggtttcttttataacagttgttgtggtcttgttgtctcctcacagca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccataaattgaatggtttcttttataacagttgttgtggtcttgttgtctcctcacagca 621

                                                                       
Query: 188 ataaaacctaaattaagacaacaattatctcatgctttctttcctacgtggaagctagac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ataaaacctaaattaagacaacaattatctcatgctttctttcctacgtggaagctagac 561

                                                                       
Query: 248 atggaagcctttcagaatcctggtcttgcatcccctgtctctgtcatcatccccatcatc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atggaagcctttcagaatcctggtcttgcatcccctgtctctgtcatcatccccatcatc 501

                                                                       
Query: 308 agactgctatgttttatgattattatttataactaggtcttatttctttattctttattt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agactgctatgttttatgattattatttataactaggtcttatttctttattctttattt 441

                                            
Query: 368 ctttattctttgctcatatgcttaaagatcaga 400
           |||||||||||| ||||||||||||||||||||
Sbjct: 440 ctttattctttgttcatatgcttaaagatcaga 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)