BAC Information

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BAC

Clone NameMSMg01-086N09
Chromosome13 (Build37)
Map Location 43,412,340 - 43,499,284
singlet/doubletdoublet
Overlap geneSirt5, Nol7, Ranbp9
Upstream geneHn1-ps4, Phactr1, Tbc1d7, Gfod1
Downstream geneLOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06, EG637868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086N09.T7 (MSMg01no086_n09.b1)MSMg01-086N09.TJ (MSMg01no086_n09.g1)
ACCAG306040AG306041
length695695
length of high quality
(start - end)
317 (44 - 360)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no086_n09.b1 PHD_FILE: MSMg01no086_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:43 2005CHROMAT_FILE: MSMg01no086_n09.g1 PHD_FILE: MSMg01no086_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,412,340 - 43,412,593)(43,498,994 - 43,499,284)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAACTTTTCCTACTGAGGTGTGAAAGTCCTCAGCACGCCTAGTGTG
CATGATTTCAAGATGGCTGGCTTCTTCCTCCCCCTCTTGACCTGAGACAA
AAGCCAGTGGCTTAAAACAAAGGCTCGAAGGTTCTTTCTCCCATCCGAAG
CTTCCCTGCGAATGTATTGCCTCATCAAAGCCCCAAGGCCAGAGCGGGAC
TTGTTACATAGCTGTGGGCTGTTCAGCCATCCTGTCTCTCTTCAAACTGA
TCAACCCTAAATTAGGAGAGGAAACCTTCAGAGACTAAAAACCCTGGACC
TCGGTCAAGCTGAGACTGCATCCCTCGCCTTCCTAAGATCCTGCTCCGCT
TTGCAAAAGGGTCTTTATCTCTGAGTATCTGAGGTGTGCGTGCGTGCCGT
GCGTGCCGTGCGTGTATTCGGACTTTCTTCGATTGCTGGTTCTGTCTGCT
CCTGCTTGCTGAGTTTAAGATTTTTCTGCTGTTACCTGCCCAGCTCATGA
TTTTTCCTACCTTTTAATTTTTTTCTTAACAGAGAAAATGACCATGATCA
AGACCCCTGTACCTTCTAAGTGTGCTCGCTGGCCATTGAACCTCGGTTCT
TGCATCTGCTCATCCCACTCTTAACCATAGGCTACATTCCCACCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGATAGACAGGAAAGCAAAGTGAGAC
CATGTATCAAAAAATAAAATTAAAAAAAGTACCTCCATTCCCCAAGTACA
TTTCTTAGAAATATCAATTTGCTTTGCTAGTCAGATAGTTCAGATCCTCA
GACATTGATGTAGCAAATATTGTATGGCCCTGATTGAAAGATGATTTTTA
AAATGGTTGTTAATTGCTATTTTCACTTTCTAATTCTTTTTCCTTAGAAA
CCCACAATCTGCCAAAGCAACCTCCACTTGCCCTAGCCATGGGACAGGCC
ACACAGTGTCTATTCCTGACCGCCTCGCCCAGGAGTTGGGTCCTGTGCAT
TTGCCACAGTGGAAGACTACCTACATTAGCTATGCACTTCAAGAGCTCAC
ACTCACATTGTGGCAAACAGTCAACATGGAAGTAGACCGGCTCTGCTGAT
TTGAAATTTACATTTTTTTTAATTATGTACTGGGGACAGGCTTTTGTCGC
TTTACATTGCTTCCTAGCTTACAGCATGATGCAAATGATTTTCTAACTTA
GTGTTAGGAGAAAATATTTTCCATCTTTTAACCTCTTAGTTGTCTAAAAG
TTAAAATATTACTGAATTTCATACCTTCCTACTGTATTTCATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_n09.b1 MSMg01no086_n09.b1 CHROMAT_FILE:
MSMg01no086_n09.b1 PHD_FILE: MSMg01no086_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:43 2005
         (317 letters)



>mm_chr13_43412075_43412793
          Length = 719

 Score =  456 bits (236), Expect = e-133
 Identities = 249/254 (98%), Gaps = 2/254 (0%)
 Strand = Plus / Plus

                                                                       
Query: 66  caagatggctggcttcttcctccccctcttgacctgagacaaaagccagtggcttaaaac 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 caagatggctggcttcttcctccccctcttgacctgagacaaaagccagtggcttaaaac 325

                                                                       
Query: 126 aaaggctcgaaggttctttctcccatccgaagcttccctgcgaatgtattgcctcatcaa 185
           ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 326 aaaggctagaaggttctttctcccatccgaagctttcctgcgaatgtattgcctcatcaa 385

                                                                       
Query: 186 agccccaaggccagagcgggacttgttacatagctgtgggctgttcagccatcctgtctc 245
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agccccaaggccagagcaggacttgttacatagctgtgggctgttcagccatcctgtctc 445

                                                                       
Query: 246 tcttcaaactgatcaaccctaaattaggagaggaaaccttcagagact--aaaaaccctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 446 tcttcaaactgatcaaccctaaattaggagaggaaaccttcagagactttaaaaaccctg 505

                         
Query: 304 gacctcggtcaagc 317
           ||||||||||||||
Sbjct: 506 gacctcggtcaagc 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 719
Length adjustment: 9
Effective length of query: 308
Effective length of database: 710
Effective search space:   218680
Effective search space used:   218680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no086_n09.g1 MSMg01no086_n09.g1 CHROMAT_FILE:
MSMg01no086_n09.g1 PHD_FILE: MSMg01no086_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:43 2005
         (290 letters)



>mm_chr13_43498794_43499484
          Length = 691

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatagacaggaaagcaaagtgagaccatgtatcaaaaaataaaattaaaaaaagtac 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 caggacagacaggaaagcaaagtgagaccatgtatcaaaaaataaaattaaaaaaagtac 432

                                                                       
Query: 61  ctccattccccaagtacatttcttagaaatatcaatttgctttgctagtcagatagttca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ctccattccccaagtacctttcttagaaatatcaatttgctttgctagtcagatagttca 372

                                                                       
Query: 121 gatcctcagacattgatgtagc-aaatattgtatggccctgattgaaagatgatttttaa 179
           |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 371 gatcctcagacactgatgtagcaaaatattttatggccctgattgaaagatgatttttaa 312

                                                                       
Query: 180 aatggttgttaattgctattttcactttctaattctttttccttagaaacccacaatctg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aatggttgttaattgctattttcactttctaattctttttccttagaaacccacaatctg 252

                                                              
Query: 240 ccaaagcaacctccacttgccctagccatgggacaggccacacagtgtcta 290
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccaaagcaacctccacttgccctagccatgggacaggccacacagtgtcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)