BAC Information

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BAC

Clone NameMSMg01-087D16
Chromosome13 (Build37)
Map Location 33,441,400 - 33,517,528
singlet/doubletdoublet
Overlap geneOTTMUSG00000000724
Upstream geneWrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c, Serpinb9d, Serpinb9e, Serpinb9f
Downstream geneSerpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik, LOC620132, EG666666
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087D16.T7 (MSMg01no087_d16.b1)MSMg01-087D16.TJ (MSMg01no087_d16.g1)
ACCAG306323AG306324
length818714
length of high quality
(start - end)
130 (105 - 234)140 (112 - 251)
definitionCHROMAT_FILE: MSMg01no087_d16.b1 PHD_FILE: MSMg01no087_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:16 2005CHROMAT_FILE: MSMg01no087_d16.g1 PHD_FILE: MSMg01no087_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:16 2005
singlet/doubletdoubletdoublet
BLAST hitpluralplural
Map location.(33,441,400 - 33,441,529)(33,517,389 - 33,517,528)
sequence
TCCCCCTATTGTCTTTTTTTCTTTTCTTTTCTCTTTCCCCTTCATTCTTT
CATTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTATCTGTGTTATCCCTTTACTGAATGACAATCATGATATTA
AATGTGGAGAGACTTTGTGAAAGAATCATTCTCTCTGTGTCAATGTGCAT
TATCAAGAAAGTAAAGAGAACATGTCTATAAAATGAAAGAATGGTAAATC
TACAGACACAGAGAGAACATTGGTTGTTACACATACTGGGAGGAAAGAAC
AGAGTCACTGATTGACGGATATACAATTCGTTTGAAAGGCGATTACAGAT
GATTATAGCATGTCATTGACAGGCAATGAATTTTCTACTCATATATTACT
ATCATTGCTAATATTATTAGTTTTTTATTATACATATAAATGTAATAGAA
TGCTTTGAAATATTAAATTATTTACCCACCTGCTTTGTTCTTGCAACATT
TTATGTAATACCATATCATCATATGTATTCTAGATACCCCAGAATATCTG
AACCATCATTGCACCTTTTACCCTTGTGACTTAACTTATTCCATTATTAC
TTTAACCCATTCGTTATTTTTAATCAATTTGTTCCCTTCCTCTACATATC
ACTATACATCTATCTTCCGATATAACCATGATGCAATACCTCCTTACCAT
TCCTCGTTCTTACCGATTCCTACCTCCATTGTTTAATTTGTTACCATTCC
CCATCATAATCCTCCCACATTTGAGCTATGTCTTTATTTCCCTTCCCTTT
CTCCTTATATATTCCCAT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCATTGCCAAACACAAGCTCACAATAAACTAATCCTATGCTTTCC
TCCAATACCCTCATGGCTCAGAGCTTTTATATTAATATTGCTGCCACCTT
TGCATTAAATTTTATTTATAATGTGAGATACAAGCCCAGTGAGGTTCTTT
TATTTTTGAATATATATTTGTCCCAGGATTTGAAATAGTTTTCAAGTCGA
AGAGAAAGTGTTCATGATCAATACAGAGACATATGCTTTAATTTGTTGGA
TAGCACATTGCTACTTATTCACTGTCTATGGACACATTTATAGCCATTTT
TTTTTTACCTCCCCCCCCCCCCTTACATAGTACATACAAAATTATACTCT
GCCCCCCGAATAAAGAACAAAAATGCATTTGTCGGCTGGCTCCTTATATG
TTATTTTCCCTTAAGGATGTACACACCCTTTTGACCTGCTCCAACTATAT
TGATCATTCCAACCTCATTATCCAATATCGCTTTCATTCTCAACATTATT
CTTTATCCCTTCCTATTTCCTGTTTGGATATTAACCTTTCCCGTCCAACC
CTACCAATCTTTATTTCTCCACTTTTGGTATTTCCTTAACCGATCAAATT
TATTCCACACCCTCCTTTTCCCCTTTTTCCGGTCCTTTTCCTCCCTTATT
TTACCTTCCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_d16.b1 MSMg01no087_d16.b1 CHROMAT_FILE:
MSMg01no087_d16.b1 PHD_FILE: MSMg01no087_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:16 2005
         (130 letters)



>mm_chr13_33441200_33441729
          Length = 530

 Score =  213 bits (110), Expect = 4e-60
 Identities = 125/130 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttatctgtgttatccctttactgaatgacaatcatgatattaaatgtggagagact 60
           |||||||||||||  ||  |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attcttatctgtggcatggctttactgaatgacaatcatgatattaaatgtggtgagact 260

                                                                       
Query: 61  ttgtgaaagaatcattctctctgtgtcaatgtgcattatcaagaaagtaaagagaacatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtgaaagaatcattctctctgtgtcaatgtgcattatcaagaaagtaaagagaacatg 320

                     
Query: 121 tctataaaat 130
           ||||||||||
Sbjct: 321 tctataaaat 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no087_d16.g1 MSMg01no087_d16.g1 CHROMAT_FILE:
MSMg01no087_d16.g1 PHD_FILE: MSMg01no087_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:16 2005
         (140 letters)



>mm_chr13_33517189_33517728
          Length = 540

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggctcagagcttttatattaatattgctgccacctttgcattaaattttatttataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 catggctcagagcttttatattaatattgctgccacctttgcattaaattttatttataa 281

                                                                       
Query: 61  tgtgagatacaagcccagtgaggttcttttatttttgaatatatatttgtcccaggattt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 280 tgtgagatacaagcccagtgaggtgcttttatttttgaatatatatttgtcccaggattt 221

                               
Query: 121 gaaatagttttcaagtcgaa 140
           ||||||||||||||||||||
Sbjct: 220 gaaatagttttcaagtcgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)