BAC Information

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BAC

Clone NameMSMg01-088E12
Chromosome13 (Build37)
Map Location 8,999,452 - 8,999,613
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC791083, LOC382722, Adarb2, EG666941, Wdr37, LOC100039632, Idi1, EG382723, LOC100039655, Idi2, Gtpbp4
Downstream geneLOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, Chrm3, LOC100039604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088E12.T7 (MSMg01no088_e12.b1)MSMg01-088E12.TJ (MSMg01no088_e12.g1)
ACCAG307081AG307082
length767739
length of high quality
(start - end)
162 (143 - 304)83 (56 - 138)
definitionCHROMAT_FILE: MSMg01no088_e12.b1 PHD_FILE: MSMg01no088_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:42 2005CHROMAT_FILE: MSMg01no088_e12.g1 PHD_FILE: MSMg01no088_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTATAAATATTNGGGTGGGCTCTCTTNTATCTACGCCCCTTCCCCCT
CATGCCCCTCCTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGG
AGNCCGAGCCGCGGAANNCCNAATTTCAAAAAAAATTGAGNACATGATGA
CCCAAAGGAATTTCAGAATTACATTTTATGACTACCGGTGACTACACTGT
CCCCCAACTCATGCTTTGCGTTTGTGTTCATGTATTTCTTACCTACCATA
AATAATCCTTTGAGGGTATTTGTTGTCCCCCATATTGCCAAAGAGAAAAC
TAAAGATCAAAGGAATTAAGTAGTATCTTCTGACTCACACAGTTTGTAAA
CTGGAGTTGGAGCCATAACTTAAAGCTTTTTTTTTTTTGCCTTTAATGCT
TACACTCTCGAGGCACAGTTTTTTGTATGCCCCACTTTGAGACCAGTCTG
ATCTACATCGCGATTTCCAGGACAGTCACACTTATATATCAAAACCTGTC
TCATAAAATCTCAAACCCACCAAGAATCATATAAATGTAATTTTAATTCT
TGCGTAACAGAGTACAACAAATTGTGATGTTAGCTTTTTATTGCATTGAC
TTACCGAACTCTTTCCCCTTTATTTTCTTTACTTAACTTCAGTCCGCCTT
CTTCTTGTCCAGGACAACCCATGTTCTTTTTACATGAGTCGACCCTTTTT
CCGAAAGCACAACTGAACCTTCTTTTTTTTTTCCTCACCTTGACATCTCC
TTATTCTGTTACCCATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTCTTTTCTCTACATCCTAAACAACATTTAGGTGGGTTGGTTGAG
TTGTTTTGTTGTTGTTTTTGTTTTGTTTTGTTTTGATCTTTCTCCCCTCA
TTCTTCCCCCCCCCTTTCCCCCCGTTCTGTCTTATCCTTATGGTCCTCAC
ACCAGCCCTCCCTCACCCTTCACTGTCTTGCGTTAATTGCTCCCTTCTTC
TCTCTCCGCCTCTGTGACTTACACCACTCCCGTTACTTTAGTCCCACGTT
ATAATTTTTTCTTACACCTAAGCGACCACAACTTAGCAACGTATTTCCCT
ATACCCCTCCTCCCCGCCCGATATATGTTACGAAACGCCAAAAAACGCCC
CCCTATGAACACCCCCCTTTATAACACCACATACACCAAATGAACATTGG
AAAGTGAAGTGCAAAAGAATAAACATATCAACCCGTTCCCTCTAAATCAA
TCGCTTACACATAAATATTCTCATTTCCTACCTGACACAAAATATATGAT
ATCCTCAATATCACGACATCTAGACATCGGAGCCCACCAACACGGAATAA
CGCAAAAACGCTTACACATACAACAACCAATACAAGAAAACACCCAGAGA
GACTTCACCCAACACACCCGCCCCTGGATACTTAAAATAACAACCGCCGA
CCACACCCAAACAAAACACCCTACAACCACTACCCGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_e12.b1 MSMg01no088_e12.b1 CHROMAT_FILE:
MSMg01no088_e12.b1 PHD_FILE: MSMg01no088_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:42 2005
         (162 letters)



>mm_chr13_8999252_8999813
          Length = 562

 Score =  298 bits (154), Expect = 1e-85
 Identities = 160/162 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgatgacccaaaggaatttcagaattacattttatgactaccggtgactacactgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 362 catgatgacccaaaggaatttcagaattacattttatgactaatggtgactacactgtcc 303

                                                                       
Query: 61  cccaactcatgctttgcgtttgtgttcatgtatttcttacctaccataaataatcctttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cccaactcatgctttgcgtttgtgttcatgtatttcttacctaccataaataatcctttg 243

                                                     
Query: 121 agggtatttgttgtcccccatattgccaaagagaaaactaaa 162
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agggtatttgttgtcccccatattgccaaagagaaaactaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)