BAC Information

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BAC

Clone NameMSMg01-088J07
Chromosome13 (Build37)
Map Location 118,919,051 - 118,919,583
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623312, Emb, EG623365, LOC382807, Hcn1, LOC100041695, LOC674926
Downstream geneMrps30, LOC668309, LOC100041278, Fgf10, LOC100041298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088J07.T7 (MSMg01no088_j07.b1)MSMg01-088J07.TJ (MSMg01no088_j07.g1)
ACCAG307299AG307300
length688681
length of high quality
(start - end)
477 (112 - 588)533 (63 - 595)
definitionCHROMAT_FILE: MSMg01no088_j07.b1 PHD_FILE: MSMg01no088_j07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:06 2005CHROMAT_FILE: MSMg01no088_j07.g1 PHD_FILE: MSMg01no088_j07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACATA
ACACCAGAGACTCTGAAAATATAGAGGAGAAAGTGGGGGAAAGCCTCGAA
GATATGCCCACAGGGGGCAAATTCCTGAACAGAACACCAATGGCTTGTGC
TGTAAGATTGAGAATTGACAAATGGGACCTCATAAAACTGCAAAGCTTCT
GTAAGGCAAAACATACTGTCAATAACACAAAAAGGCCACCAACAGAGTGG
GAAAGGATTTTCACCAATCCTAAATCCGATAAGGGACTAATTTCCAATAT
ATACAAAGAACTCAAGAAGCTGGACTCCAGAAAGTCAAATAACCCCATTA
AAAAATGGGGCACAGAGCTAAACAAAGAATTCTCAACTAAGGAATACCAA
ATGGCTGATAGCCAGAAACTGGAAAGAACCCAGATGTCCCTCAACAGAGG
AATGGATACAGAAAATGTATCCATTTACATAATGGAGTACTACTCAGCTA
TTAAAAACAATGAATTTATGAAATTCTTAGGCAAATGGATGGATCTGGAG
GATATCATCCTGAGTAAGGTAACCCCATCACAAAAGAACACACTTGATAT
GCACTCACTGATAAGTGGATATTAACCCAGAAACTTAGAATATCCAAGAT
ACAATTTTGCATACACATGAAACCCAAGAATATAGAAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXGCCTGGTCTTCATGAGAGTACCAGTCATCCAGGGGTTA
CCAAGTAGTACCCTGTCTCAAAAAGCAAAACAACTAAAAACAAACAAGTG
AACAAAAATTAGATATGAGAAGAAACTTGAATTAAAATCTCATGCAAAAA
AATACTGAAAATCATTGAAATTATATTTCCTGTAGTAGATGACTCTATAG
TTTTAGATCATTTCTGTTAATATCTGTGGAGCTGACCTGTAGGGTACACC
TATCTGCCCTCACTACTGCTTTGATATTTCTTTGCTTGGAGAGCCAAGAA
GGAAAGTGCTGCTCCTGGGTAATGATAGATGCTATCCTGACATTTTCATA
ATGTTAATGCAGCAGAGGATGAGAAATTCTTGGAAATGTGGTTATATCAA
AAATAACATCCTGCAAAATTCAACCATAAGAAGAAATTATAAAAGTACAT
TCAGAGCTGATTGACGCTCAGAGTCAGTTCATCTTCAAGATCCTCTGATC
ATTCTAAATTCCTGGGGAAAATCATTTGATTTGTCTAATGGCTGTTTAAT
AGAAGTAAAAACACATCACGATTATATATATATATATATATATATGCATT
GAATTGAGTGCTCTTTCCATCTGACAGCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_j07.g1 MSMg01no088_j07.g1 CHROMAT_FILE:
MSMg01no088_j07.g1 PHD_FILE: MSMg01no088_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:06 2005
         (533 letters)



>mm_chr13_118918783_118919715
          Length = 933

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcctggtcttcatgagagtaccagtcatccaggggttaccaagtagtaccctgtctcaaa 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 801 gcctggtcttcatgagagtaccagtcatccaggggttacaaagtagtaccctgtctcaaa 742

                                                                       
Query: 61  aagcaaaacaactaaaaacaaacaagtgaacaaaaattagatatgagaagaaacttgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagcaaaacaactaaaaacaaacaagtgaacaaaaattagatatgagaagaaacttgaat 682

                                                                       
Query: 121 taaaatctcatgcaaaaaaatactgaaaatcattgaaattatatttcctgtagtagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaatctcatgcaaaaaaatactgaaaatcattgaaattatatttcctgtagtagatga 622

                                                                       
Query: 181 ctctatagttttagatcatttctgttaatatctgtggagctgacctgtagggtacaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctctatagttttagatcatttctgttaatatctgtggagctgacctgtagggtacaccta 562

                                                                       
Query: 241 tctgccctcactactgctttgatatttctttgcttggagagccaagaaggaaagtgctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgccctcactactgctttgatatttctttgcttggagagccaagaaggaaagtgctgc 502

                                                                       
Query: 301 tcctgggtaatgatagatgctatcctgacattttcataatgttaatgcagcagaggatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctgggtaatgatagatgctatcctgacattttcataatgttaatgcagcagaggatga 442

                                                                       
Query: 361 gaaattcttggaaatgtggttatatcaaaaataacatcctgcaaaattcaaccataagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaattcttggaaatgtggttatatcaaaaataacatcctgcaaaattcaaccataagaa 382

                                                                       
Query: 421 gaaattataaaagtacattcagagctgattgacgctcagagtcagttcatcttcaagatc 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaattagaaaagtacattcagagctgattgacgctcagagtcagttcatcttcaagatc 322

                                                                
Query: 481 ctctgatcattctaaattcctggggaaaatcatttgatttgtctaatggctgt 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctgatcattctaaattcctggggaaaatcatttgatttgtctaatggctgt 269


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)